Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02338 ATGGAAAATTCAGACCACGACGAACCTGACAAGAAGAGGCCTCATCTTCTCTCCCCTGTTTCTTCCCGCATGTTCAGAAACTCTTCCAACCATTCTCCTAACAGTAAAAATGCGGATGCAGAAGCCTTACAGCTTCAAAATCAGAAGCTTGTTCAACAAACAGAAATCCAGAAACAGGCTTTACAGGATCTTGAAGAAAAAACGAAAGAATTAAAAGAAAGACAAAATTCTTATGATGACTTATTAATTGCATTCAACCAAAACTGGGAACAGTTGGTTGCTGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGACAAAGATTCTTTGCTAACTTTAGATTACCTTGATAATCCTCAAGGTTCACTTCCTCCATGTCCTCCAAATGATATATTTCTATGCAAATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTAGTGATGAGATAACTAATTTTGTCGAGAAAGCCCTTGCTCTGCGTCAGTCATCTACTAGGGAGTTGTTGGAATTCATTAATGGTACTGTTGATGATCAGATGAAAATAATTGAAGATATAGATCAGGTTTTACACGGAGATTTATCCGCGGAAGATGTTATCTTCCAAATATCTAAGATTGACGATATGACAAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGCTGGCATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACACCTTAAAGGAGAGCTTGACGAGATCGCGGCTGAACTTGAAAAGAGTAGAAGAAAACTAGTTAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCAGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCATGGGGTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATATTCTTTAGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGACTCTCTGCAGTCTGGAAAGGCTAATATCGCAAAATGGGAAAAGGAGCTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATTGAAAGGAATCATCTTGAAATTAAGATGGAAGAGGCAAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGGCAAGCGAACTCCAGAGCCTTTCAAACAAATGTGCCGATCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAGTTGGAATTTGTTCTCGATATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGATAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAGGAGGAATTAAGGGCCCAGCTTGATGAAACTGAAAGAAAAAAATCGGAGCTGGCTGAGGCTATTAAAGTTAAAGAGGCCGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGATAGAATGTCTTCTATCAGAAGCAGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAGGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACTGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATTTGA 2643 0.4011 MENSDHDEPDKKRPHLLSPVSSRMFRNSSNHSPNSKNADAEALQLQNQKLVQQTEIQKQALQDLEEKTKELKERQNSYDDLLIAFNQNWEQLVADMALLGIQAGRDKDSLLTLDYLDNPQGSLPPCPPNDIFLCKLIQKDSIEGSSSDEITNFVEKALALRQSSTRELLEFINGTVDDQMKIIEDIDQVLHGDLSAEDVIFQISKIDDMTKKEVDNFCEVINTLHAKHKEYTAGIQNYIDECLRDQSDIKHLKGELDEIAAELEKSRRKLVSLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEEAKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVDSLQSGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKASELQSLSNKCADQVLEIKSSKALIEKLQQENQELEFVLDMYGGEDYQKSLLEVRESESKARSQAEMLINALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02338 880 MobiDBLite consensus disorder prediction 282 303 - -
Vivi7g02338 880 Coils Coil 688 708 - -
Vivi7g02338 880 MobiDBLite consensus disorder prediction 21 40 - -
Vivi7g02338 880 MobiDBLite consensus disorder prediction 1 17 - -
Vivi7g02338 880 Coils Coil 249 276 - -
Vivi7g02338 880 Coils Coil 513 547 - -
Vivi7g02338 880 Coils Coil 730 825 - -
Vivi7g02338 880 SUPERFAMILY RING/U-box 827 871 - -
Vivi7g02338 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Vivi7g02338 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Vivi7g02338 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Vivi7g02338 880 Coils Coil 420 447 - -
Vivi7g02338 880 Coils Coil 583 631 - -
Vivi7g02338 880 Coils Coil 328 348 - -
Vivi7g02338 880 Coils Coil 47 84 - -
Vivi7g02338 880 CDD RING-HC_Bre1-like 820 876 - -
Vivi7g02338 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Vivi7g02338 880 PANTHER RING FINGER PROTEIN-RELATED 8 880 IPR013956 GO:0004842|GO:0010390
Vivi7g02338 880 SMART ring_2 828 866 IPR001841 -
Vivi7g02338 880 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02338 Vivi-Chr7 86602512 86619453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02338 801 875 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.41e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02338 K10696 - gmx:100796610 1236.48