Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02337 ATGGAAAATTCAGACCACGACGAACCTGACAAGAAGAGGCCTCATCTTCTCTCCCCTGTTTCTTCCCGCATGTTCAGAAACTCTTCCAACCATTCTCCTAACAGTAAAAATGCGGATGCAGAAGCCTTACAGCTTCAAAATCAGAAGCTTGTTCAACAAACAGAAATCCAGAAACAGGCTTTACAGGATCTTGAAGAAAAAACGAAAGAATTAAAAGAAAGACAAAATTCTTATGATGACTTATTAATTGCATTCAACCAAAACTGGGAACAGTTGGTTGCTGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGACAAAGATTCTTTGCTAACTTTAGATTACCTTGATAATCCTCAAGGTTCACTTCCTCCATGTCCTCCAAATGATATATTTCTATGCAAATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTAGTGATGAGATAACTAATTTTGTCGAGAAAGCCCTTGCTCTGCGTCAGTCATCTACTAGGGAGTTGTTGGAATTCATTAATGGTACTGTTGATGATCAGATGAAAATAATTGAAGATATAGATCAGGTTTTACACGGAGATTTATCCGCGGAAGATGTTATCTTCCAAATATCTAAGATTGACGATATGACAAAAAAGGAGGTTGACAATTTTTGTGAAGTAATTAATACTCTCCATGCAAAACACAAAGAATATACTGCTGGCATTCAGAATTATATAGACGAGTGCTTACGAGATCAATCTGACATAAAACACCTTAAAGGAGAGCTTGACGAGATCGCGGCTGAACTTGAAAAGAGTAGAAGAAAACTAGTTAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAGTGCAGATGCAGTGAATGGAAACGTGTCTCCTGAAAAGCCTGCTGACAGAGCCATGGGGTTGCCTGAGTTGAAGAATTTAATTGAGGAAGCCAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAAAAAATCAAATCTTGACGAAGCAGTTCCAAGAACTTCAGAATGAACTGAATGATGATAAATATGTACGCTCTTCCCGAGTATATTCTTTAGCAAATGATCAACTTCAACATTGGATTGCGGAATTGGATCGATATAAATCATTGGTGGACTCTCTGCAGTCTGGAAAGGCTAATATCGCAAAATGGGAAAAGGAGCTGAATCTTAAATTGGAGTCTTGTGATAATGCAAGGCGCATACTTGACAATTTTGACTCCAGGACTGATGAGCTCGAGCTGCAGTTGGAGAAATGTATTATTGAAAGGAATCATCTTGAAATTAAGATGGAAGAGGCAAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCCTCGGCTTTATCTAAAGAAATGGGGATGATGGAAGCACAATTAAAGCGATGGAAGGATGCTGCTCTTGAAGCTGTATCATTGCGTGAGAAAGCACATTCACTAAGAGCAGAATTGAGTGGGAAGGCAAGCGAACTCCAGAGCCTTTCAAACAAATGTGCCGATCAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGGAGAATCAGGAGTTGGAATTTGTTCTCGATATGTATGGCGGAGAGGATTATCAAAAAAGCTTGCTAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCCCAAGCCGAAATGCTGATAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCCGCCGCAGAAGCTGAAAAGGAGGAATTAAGGGCCCAGCTTGATGAAACTGAAAGAAAAAAATCGGAGCTGGCTGAGGCTATTAAAGTTAAAGAGGCCGAGGCAGAGACCTATATCTCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAGGTGGCTGAGAGGGACGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAGTTACATAGTGCTTTACTGTCTGAAAAGCAAGCTTTAGCAGATCAACTTAAACAGATTAATTCTTTGATAGAAAATTCAAAGAAAAAGATTGCAAGTAGTGTAGAGCAGCAGATAGAATGTCTTCTATCAGAAGCAGCCAAATGTACTCAAGAGGAAAAACACATTGCAGCCGCTTTAGAGTTTGCCAGGAGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTATTGCTTCATCCTCAGAGAAAGAATACGACCAAATTCAGAAAGATGTGGAAGCTTTTGAAAAGGAATTGGATAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAGGAACTAATGGAATTGAATAACCAAATTGCTGAGCTGAAAGCTGAAACTGAAGAGACCGCGGTACAACAACTTGAAGAAGAAATAAGAGTTTGCAAGAACATGATCAAATGTACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTTTGAAGTGCTACCATCTGTTCTGCAATCCATGCATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATTTGA 2646 0.4014 MENSDHDEPDKKRPHLLSPVSSRMFRNSSNHSPNSKNADAEALQLQNQKLVQQTEIQKQALQDLEEKTKELKERQNSYDDLLIAFNQNWEQLVADMALLGIQAGRDKDSLLTLDYLDNPQGSLPPCPPNDIFLCKLIQKDSIEGSSSDEITNFVEKALALRQSSTRELLEFINGTVDDQMKIIEDIDQVLHGDLSAEDVIFQISKIDDMTKKEVDNFCEVINTLHAKHKEYTAGIQNYIDECLRDQSDIKHLKGELDEIAAELEKSRRKLVSLKMQKDAAMGMNSSSADAVNGNVSPEKPADRAMGLPELKNLIEEAKIVDADRLSELQDAREKNQILTKQFQELQNELNDDKYVRSSRVYSLANDQLQHWIAELDRYKSLVDSLQSGKANIAKWEKELNLKLESCDNARRILDNFDSRTDELELQLEKCIIERNHLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAALEAVSLREKAHSLRAELSGKASELQSLSNKCADQVLEIKSSKALIEKLQQENQELEFVLDMYGGEDYQKSLLEVRESESKARSQAEMLINALDEHGLELRVRAANEAEAACEQRLSAAEAEKEELRAQLDETERKKSELAEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSALLSEKQALADQLKQINSLIENSKKKIASSVEQQIECLLSEAAKCTQEEKHIAAALEFARRELADAEKELKLLKSIASSSEKEYDQIQKDVEAFEKELDSERSSRKKLEEELMELNNQIAELKAETEETAVQQLEEEIRVCKNMIKCTVCSDRPKEVVILKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02337 881 MobiDBLite consensus disorder prediction 282 303 - -
Vivi7g02337 881 SUPERFAMILY RING/U-box 828 872 - -
Vivi7g02337 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Vivi7g02337 881 Coils Coil 688 708 - -
Vivi7g02337 881 MobiDBLite consensus disorder prediction 1 17 - -
Vivi7g02337 881 MobiDBLite consensus disorder prediction 21 40 - -
Vivi7g02337 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Vivi7g02337 881 Coils Coil 249 276 - -
Vivi7g02337 881 Coils Coil 513 547 - -
Vivi7g02337 881 PANTHER RING FINGER PROTEIN-RELATED 8 881 IPR013956 GO:0004842|GO:0010390
Vivi7g02337 881 CDD RING-HC_Bre1-like 821 877 - -
Vivi7g02337 881 SMART ring_2 829 867 IPR001841 -
Vivi7g02337 881 Coils Coil 583 631 - -
Vivi7g02337 881 Coils Coil 420 447 - -
Vivi7g02337 881 Coils Coil 328 348 - -
Vivi7g02337 881 Coils Coil 47 84 - -
Vivi7g02337 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Vivi7g02337 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Vivi7g02337 881 Coils Coil 710 826 - -
Vivi7g02337 881 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02337 Vivi-Chr7 86602512 86619493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02337 802 876 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.45e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02337 K10696 - gmx:100796610 1233.39