Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02239 ATGTCCAGAGAAAGGGGGAGATTTTTTGATGAGATAGGAAAGAAGAAAGAAGGAGATGATACTTCTCAAAAGGGAAGAATGTTAGGTTCTTCTGGAACCCTAAATACAGCTACTCCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGGTGTGCACAAGAATGTCCTTTTTCTCCATATTTTTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTTCATAAAGTCTTTGGTGCCAGCAATGTCTCAAAGCTGTTATTGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAGTTCAGTTATTACTTGGTGAACTTAATGCAATAAGGGAAGAAATACATAGATATAAACTCATGGAAGCTAACATGCTTCCTTCTTCAGAAGATGTGTCAATTGCTAGTACTATGCCAACTTCATCAACACTGCCTATGCTTCCTTCTTCTATTTACTCAGAACAAGAGAATCATCCTTCCAATTATAGATCAATTTCAAGTGATCATATATCTTATTTTGATTAA 597 0.3685 MSRERGRFFDEIGKKKEGDDTSQKGRMLGSSGTLNTATPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQLLLGELNAIREEIHRYKLMEANMLPSSEDVSIASTMPTSSTLPMLPSSIYSEQENHPSNYRSISSDHISYFD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02239 198 Pfam Lateral organ boundaries (LOB) domain 39 135 IPR004883 -
Vivi7g02239 198 MobiDBLite consensus disorder prediction 1 31 - -
Vivi7g02239 198 MobiDBLite consensus disorder prediction 169 198 - -
Vivi7g02239 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 172 - -
Vivi7g02239 198 Coils Coil 118 138 - -
Vivi7g02239 198 MobiDBLite consensus disorder prediction 1 23 - -
Vivi7g02239 198 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02239 Vivi-Chr7 85315677 85316808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02239 27 157 AS2 family AT2G40470 78.358 4.59e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi7g02239 LOB 2.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02239 - - ccaj:109797870 261.922