Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02201 ATGAACAGGAAAAGGCAGCTAAATCAGTTGAGGAATCCATTCAATTCTCACCCCTTTGAAGCAGTTTCCTCGGGCTCATGGCATCCGGTGGAGTCGATAAAAGTTAAGTCAGGAACTATAACCATACATTTCGCAGATAATCACCATATCACTATGGATAAATGTACTTCATCAGACATTCGAATAAGCTCAAGGAAAGCTATTGTGTCCGATTGCTCCCGTTTTTTACGTCCTGGAATCGACATATGCGTGCTAACACCCCCTCAACAAGCCAATGATTCAGCTGGTTTAAATCTAGAGCCTGTTTGGATGGATGCTAGAATAAGTTCTATACAAAGAAAGCGGCACGATTCCGAGTGCTCGTGTCAGTTTTTTGTTAACTTCTATGTTGATCAAGGTTCACTTGGTTTAGAGATGAGAACTCTTTGTAAGGATATCAAAGTATTCGGACTTAATCAGATTTCCATCCTCCAAAAAGTCGACCATAATCCTTGTGAAAATCAGCCCTACCGGTGGTCTTCATCCGAGGATTGCTCTTCATTACCACACAGTAAATTGCTATTGGGAAAGTTTCTAGCCGATCTTTCATGGTTAGTTGTTACGTCGGTTATCATGAAGGTTTCTTTCAGTGCAAGATCAGTTGAAAACAAGATGGTGTATCAAATTTTGGTAGGCGATAGTACTACTAGCTCGTTGTCGAACATCGAGTCTCATATTGATGTTGTCAGTTTCAAAAATGACAATGGCATGTTAGTACCAATCGTTTCTCAAGTTGCTATAGCTAACACCAAGAGAGTTTGTCAAGCATACGAATCCCATGCGGATGAAGCGTCGTCATCTTCAAATGCTGACGGGTTACGACGCTCCAAACGCAGGCATGTCCAGCCCGAGCGTTACCTTGGTTGCGAAGTTAAAGAGTTGGATGTTGGTTCCTTTAGAAACAGTCCGCCGGTTAGGATAAATACGTCCAACAAAGAAGACGATATGTCGTTGTCTTTAGCGTGCTTTTTGCGTTTGCATCATAACCGTCAAGAAAAGGATGCTGAGAAATCTCAGAAGTCCGACAGACCGAATACCAGCCAAAAACTTCTAGTGTACAATCGGAGGCCTAAAAACCGAGAAGTGAAGAAGTCTTGTGAAGTTGATCAAAATGAACATCATAATCCACTTGCTATTATTCCTCTCCCTGATCAAGATGCCGATCCAATAGCCGTGGAGCATTGCAATCTAAACGAAAACGCTATTAGAAGTAACGAGCCTGTATCATCTGATATATCTTTGAAGTATCGTCATTTGGTTAATAGTCCTAAACCAAGGAAAAACATTAACTTGTTAGATTCATCTGGCAAGTCGGAAGACGCTGAAAGTAGCGATAATGCTTTTCTGAGAAGTAAATTTTTCAGCTCCTCTAAGCTACAAAAGAAGAGTTTGGGTGGTTTGGATGATATGGATCTTGGAAATAAATGGGAAGGGATAAAAAGAAAATCCAAAAAAGGTTCTCATGAGGGAAAATATCGTTCGACGTATTTAAGAAATAACGGCGAAGGAAGAACTCATAATTATAAAGACAGAACATTGAATGCAACTGCATACAAGGATTTGATAAATTCATATTTATCGAATATTAATGAAATACCTGTCAAAGAAGAGGCGCCTATTACTGATCAATGGAAGAAACACGACACAACAAACGGAGTTGGACAAAAGAAGGAAACCGAGATTTCTCATGGAGAGGCTGAAGAAGAAAAAGCTGCACTCGATGTACTGTGGAAAGAACTTGAAGTGTCGCTAGCATCGAGTTATTTTGAAGAATCCGAGGTTTCGAATGCGATTGTTCCTTACGAGGCTGAGAAAAATACGAAAAAAGATTGTGAACATGATAATAGATTGGACGAAGAAATTGGAATATACTGCATTAGATGTGGATTCGTGACCACCGATATCCGAGATGTTAATCCAATCTTCGTTGAAAACTCGGTGTGGCGTCAGGAGGAGAAGCAGCGTGATGGAGTAGAAGACAACGAGCATACGAAGGCTGATGAAGACGATGATTTCCGTTTCTTTCCGACCGATGTCTCTCCCGACAAACCAATATCTGCAGAAAACGAAAGCGTTTGGTCATTAATTCCCGAACTCAAAGATAAGCTGCACGTGCATCAAAAGAAAGCTTTCGAGTTTCTTTGGCAAAATATCGCAGGCTCTACCGATCCAAGACTAATTGAAGAAGAATACAAAAAAAGAGGTGGATGTGTGATCTCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATTGCTTTTCTCGTAAGCTACTTGAAGTTATTCCCGGGGAAGCGGCCTCTAGTTCTTGCACCGAAAACAACTCTCTATACTTGGTATAAAGAGTTTATCAAGTGGGAGATTCCTATACCGGTGTATCTGATTCACGGTCGCAGAACCTATAGAGTATTCAAGCAGAATAATTTTGCTTCTCTTCCTGGAGTTCCCAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCATCCGAGCGTTCTTATCATGGGCTACACTTCGTTTTTAACGTTGATGCGAGAGGATTCGAAGTTTGCTCACAGAAAGTTTATGGCTAAAGTGTTGAGGGAAAGTCCTGGACTATTGGTACTTGATGAAGGCCACAATCCGAGAAGCACAAAGTCGAGGTTGAGAAAAGTTTTGATGAAAGTACAAACCGAATTGAGGATATTACTTTCGGGTACTTTGTTTCAAAATAACTTCTGCGAATACTTCAATACTCTCTGCTTGGCAAGACCGAAATTCGCTAATGAAGTATTGAAAGCATTAGACCCTAAATACAAGAGGAAAAAGAAAGGAGCGGAACGGAAAGGAGCAGAGAAAGCACAATATTTAATCGAGTCACGTGCTAGAAAGTTCTTCTTAGATAACATTGCTAAGAAAATTGACTCGAACGTTGGTGAGGAAAGATTGCAAGGCTTGAACATGTTGAGAAATGTGACGAACAGTTTTATCGATGTTTATGAAGGTGGAAGTTCCGATGATTTGCCTGGTATACAAATTTACACATTGCTCATGAACACAACTGATATACAGCATGAGATTTTGCGGAAACTGCATATTGACATGGCTAAGTGCAGTGGATACCCTCTCGAGTTAGAGCTTCTGATAACACTTGGATCGATTCATCCTTGGTTGGTCAAAACCGCGGTATGTTCTCAGAAGTTTTTAACAAAGGAGCAATTGTCTGATCTTGATAAGTACAAGTTTGATTTGAAAATAGGTTCAAAAGTCCGATTTGTTTTGAGCCTTATCTATCGCGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCACCGGTGAGACTATTTCAAGAATATTTCGAAAAGTACTTTGGATGGCAAAAGGGCCGCGAAGTTTTAGTACTAACCGGGGAACTCGAGCTCTTCGAACGTGGCAAAATAATGGATAAATTCGAGGAGCCTGGTGGAGCATCAAAGATACTACTTGCTTCAATCACAGCTTGCGCTGAAGGCATTAGTTTGACAGCGGCTTCGCGTGTGATCATGCTGGATTCAGAGTGGAATCCTTCGAAAACAAAGCAGGCTATTGCACGCGCGTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGCTCGTTGGAGGAAGATAAGTATCGAAGAACCACGTGGAAAGAGTGGGTGTCGAACATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTGCGCGAAATGGTCGAGGAAGATAAGTCTAAATCATTTCATATGATCATGAAGAATGAAAAAGCTTCCTCCACTAACAAATAA 3912 0.4108 MNRKRQLNQLRNPFNSHPFEAVSSGSWHPVESIKVKSGTITIHFADNHHITMDKCTSSDIRISSRKAIVSDCSRFLRPGIDICVLTPPQQANDSAGLNLEPVWMDARISSIQRKRHDSECSCQFFVNFYVDQGSLGLEMRTLCKDIKVFGLNQISILQKVDHNPCENQPYRWSSSEDCSSLPHSKLLLGKFLADLSWLVVTSVIMKVSFSARSVENKMVYQILVGDSTTSSLSNIESHIDVVSFKNDNGMLVPIVSQVAIANTKRVCQAYESHADEASSSSNADGLRRSKRRHVQPERYLGCEVKELDVGSFRNSPPVRINTSNKEDDMSLSLACFLRLHHNRQEKDAEKSQKSDRPNTSQKLLVYNRRPKNREVKKSCEVDQNEHHNPLAIIPLPDQDADPIAVEHCNLNENAIRSNEPVSSDISLKYRHLVNSPKPRKNINLLDSSGKSEDAESSDNAFLRSKFFSSSKLQKKSLGGLDDMDLGNKWEGIKRKSKKGSHEGKYRSTYLRNNGEGRTHNYKDRTLNATAYKDLINSYLSNINEIPVKEEAPITDQWKKHDTTNGVGQKKETEISHGEAEEEKAALDVLWKELEVSLASSYFEESEVSNAIVPYEAEKNTKKDCEHDNRLDEEIGIYCIRCGFVTTDIRDVNPIFVENSVWRQEEKQRDGVEDNEHTKADEDDDFRFFPTDVSPDKPISAENESVWSLIPELKDKLHVHQKKAFEFLWQNIAGSTDPRLIEEEYKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNNFASLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFANEVLKALDPKYKRKKKGAERKGAEKAQYLIESRARKFFLDNIAKKIDSNVGEERLQGLNMLRNVTNSFIDVYEGGSSDDLPGIQIYTLLMNTTDIQHEILRKLHIDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKFEEPGGASKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSNMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASSTNK 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02201 1303 MobiDBLite consensus disorder prediction 493 520 - -
Vivi7g02201 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1284 IPR027417 -
Vivi7g02201 1303 CDD SF2_C_SNF 1096 1232 - -
Vivi7g02201 1303 CDD DEXHc_ATRX-like 716 942 - -
Vivi7g02201 1303 Gene3D - 691 985 IPR038718 -
Vivi7g02201 1303 MobiDBLite consensus disorder prediction 272 292 - -
Vivi7g02201 1303 Gene3D - 1032 1303 IPR027417 -
Vivi7g02201 1303 MobiDBLite consensus disorder prediction 559 578 - -
Vivi7g02201 1303 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 54 1299 IPR044567 GO:0080188
Vivi7g02201 1303 MobiDBLite consensus disorder prediction 343 363 - -
Vivi7g02201 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 944 IPR027417 -
Vivi7g02201 1303 SMART ultradead3 712 957 IPR014001 -
Vivi7g02201 1303 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1268 IPR001650 -
Vivi7g02201 1303 MobiDBLite consensus disorder prediction 437 456 - -
Vivi7g02201 1303 SMART helicmild6 1132 1221 IPR001650 -
Vivi7g02201 1303 Gene3D - 97 147 - -
Vivi7g02201 1303 Pfam Helicase conserved C-terminal domain 1104 1220 IPR001650 -
Vivi7g02201 1303 Pfam SNF2-related domain 716 970 IPR000330 GO:0005524|GO:0140658
Vivi7g02201 1303 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 741 941 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02201 Vivi-Chr7 84805329 84811429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02201 1100 1239 RAD5 or RAD16-like Gene Family AT5G43530 32.867 2.01e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi7g02201 SNF2_N 5.9e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02201 K10875 - gmx:100811703 1777.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02201 7 84805329 84811429 Vivi7g02201 7 84805329 84811429 ECH
Vivi3g04352 3 78335939 78341445 Vivi7g02201 7 84805329 84811429 PCT