Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02196 ATGGGTGGAAACTCACCATGTGCTTCATGCAAGCTTCTGAGACGCAGATGCGCAAAAGATTGCACCTTTGCTCCTTATTTCCCTTCTCATGAACCCCAAAAGTTTGCCATAGTTCATAAGGTTTTCGGAGCTAGCAACGTTAGCAAAATGTTACAGGAGCTTCCGGTTCATCAAAGAGCAGATGCAGTGAGCAGTTTAGTCTACGAAGCAAATGCGCGAGTGAGAGATCCAGTTTACGGCTGTGTTGGAGCAATATCATATCTACAAAACCAAGTTTCTGAACTTCAAATGCAGCTTGCAGTTGCACAAGCAGAGATACTCTGCATCCAGATGCAAAATGAGCAAGTGATTAGTCCAAATCCAGAAATTAATCAAGATCAGAAAACTTACTTCACTCAAGATGAACTCACTCAGTTTCTTAATTATGGTTCTTCTTCTAGTAATAATAATAATGTTTATGATTCTCTTAAGAGAGATAACATTTATGGACATGATATGGTTTCTTGA 507 0.3945 MGGNSPCASCKLLRRRCAKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVISPNPEINQDQKTYFTQDELTQFLNYGSSSSNNNNVYDSLKRDNIYGHDMVS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02196 168 Coils Coil 85 105 - -
Vivi7g02196 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 135 - -
Vivi7g02196 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vivi7g02196 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02196 Vivi-Chr7 84739426 84740497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02196 3 131 AS2 family AT2G30130 81.061 6.45e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi7g02196 LOB 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02196 - - lang:109360574 278.485