Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02183 ATGAATGATCATAGATCAAAGATGATGATCATATCTCCAGGTTTATTACCAACTGAATCATTACTAGATTCATTGGTTTTAATCTCCAATGAAGTTAGTTCAATTGAAAATTTTCCATTAGTACAAATAAAAAATGTATCATCCATGATAAGAAGGGTCAAGCTTCTTTCATCATTGTTTGAAGAGATTCAAGAATCCGATTCACCGCTTCCGCCTTCGTCGATTCTTTGTTTCACAGAACTCTTTTCCATGATCACAAGAGTGAAGATTCTCATTCAAGAATGCAAAGATAGAAGCTCTCTTTGGAGTCTAATACAGTTGGAGTTCGTTTCGAATCAGTTTTTCGTGCTTGTGAAAGAATTCGGAAGAGCTTTCGATATTCTTCCTTTGAATTTGCTTAATGTGACTCATGATATAAAGGAGCAGATTGAGCTTTTGCATAGACAAGCTAAGAGGGTTGAAGTTGAATTGTTTATTGATCCTAGAGAGGTTCAAAGAAGAGAAAAGCTTTTGGAAGTAATGTCGAAGAATTGCTTGCAGAACAAGAAAACTAATAAAGGGTTTATTGATTTTGTGAAAGTGGAAGAGATAATGAGTAGCATTGGTTTGAGAACTTTATCGGATTACGTCGAGGAAATATCGAAATTAGAGGTTGAAGCTCAGAATCAAGCGGGGACGGGAGGACTAATCGTCGTCTCGAATATAAACAATCTCATGTTGCTCGTTTCGTATACGAAATCGATGGTATTCAGAAACGACGACGAATCAGAAGAGTGTAAGCCGTTATCTATGTTTCTATACAACAAAACTAAAATACATGATAATGACAGTTCTTTGTTATCTTCATCTTCTTCTCGATCGATGATGTCGTCGATGGTTAGTATTCCGGACGAATTTCGTTGTCCGATTTCGCTAGACCTAATGAGGGATCCTGTGATTGTTTCATCGGGACATACTTATGATCGAGTTTCGATTGCGGAATGGATAAACTCTGGTCACCATACTTGTCCTAAAAGTGGACAAAGACTAATCCACACTGCTCTAATACCAAATTATGCATTGAAGAGTCTTGTTCATCAATGGTGCTACGAAAACAATGTCTCGGTGAACGAATCGAAGGAAAACAATAACAGTAGTAGCAAAAGGCACAAGAATGAGAATGCAGTTGATCATATTTCAGCAAACAAGGCATCAAAAGATGCTGTCAAAATGACAGCAGAATTTCTTGTGGGAAAATTAGCAACCGGTTCAACCGATATCCAAAGACAGTCCGCGTACGAGATTCGCCTCCTTGCGAAAACTGGTATGGACAACCGAAGAATCATAGCCGAGGTAGGCGCGATTCCGTTTCTAGTAACACTTTTAGTATCTAAAGATTCAAGAATCCAAGAGCACGTCGTGACAGCGTTATTCAACCTATCGATCTACGACAATAACAAGATTCTAATCATGGCGGCCGGAGCGATTGACAACATAGTCGAAGTACTCGAGTCAGGAAAAACAATGGAAGCGCGAGAAAACGCTGCAGCGGCTATATATAGTTTATCAATGATAGATGATTGTAAAGTGCAAATTGGAGCAAGTTCTAAGGCAATACCTGCATTAGTAGGACTATTAAAAGAAGGTACACCAATTGGTAAAAAAGATGCTGCTATTGCATTGTTTAATCTTGCAGTTTATAATCCTAACAAGTTAAGCATTGTTAAAAGTGGAGCAGTTACTTTGCTTGTTGAGTTGTTGATGGATGATAAAGCCGGGATAACCGACGATTCGTTGGCGGTGCTTGCCGTGTTGTTAGGTTGTTCTCAAGGGTTGGAGGAGATAAAGAATAGTAAGAGTTTGGTGCCAATTCTTATTGATCTTTTGAGATTTGGATCAGTGAAAGGGAAGGAAAATGCAATAACACTTTTGCTTGGATTGTGTAAAGAAGAAGGTGAATTGGTTGCAAGGAGATTGTTGGCAAATCCTAGGAGTATTCCTTCTCTACAAAGTTTGGCTGGTGATGGTTCTTTGAGAGCTAGGAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCATCATTCTTTGTGA 2088 0.3865 MNDHRSKMMIISPGLLPTESLLDSLVLISNEVSSIENFPLVQIKNVSSMIRRVKLLSSLFEEIQESDSPLPPSSILCFTELFSMITRVKILIQECKDRSSLWSLIQLEFVSNQFFVLVKEFGRAFDILPLNLLNVTHDIKEQIELLHRQAKRVEVELFIDPREVQRREKLLEVMSKNCLQNKKTNKGFIDFVKVEEIMSSIGLRTLSDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMLLVSYTKSMVFRNDDESEECKPLSMFLYNKTKIHDNDSSLLSSSSSRSMMSSMVSIPDEFRCPISLDLMRDPVIVSSGHTYDRVSIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVSVNESKENNNSSSKRHKNENAVDHISANKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFNLSIYDNNKILIMAAGAIDNIVEVLESGKTMEARENAAAAIYSLSMIDDCKVQIGASSKAIPALVGLLKEGTPIGKKDAAIALFNLAVYNPNKLSIVKSGAVTLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNSKSLVPILIDLLRFGSVKGKENAITLLLGLCKEEGELVARRLLANPRSIPSLQSLAGDGSLRARRKADALLRLLNRCCSQPHHSL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02183 695 SUPERFAMILY ARM repeat 405 684 IPR016024 -
Vivi7g02183 695 FunFam RING-type E3 ubiquitin transferase 294 368 - -
Vivi7g02183 695 ProSiteProfiles U-box domain profile. 294 368 IPR003613 GO:0004842|GO:0016567
Vivi7g02183 695 Pfam U-box domain 295 365 IPR003613 GO:0004842|GO:0016567
Vivi7g02183 695 CDD RING-Ubox_PUB 296 348 IPR045210 -
Vivi7g02183 695 SMART Ubox_2 298 361 IPR003613 GO:0004842|GO:0016567
Vivi7g02183 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 488 IPR000225 GO:0005515
Vivi7g02183 695 Pfam Armadillo/beta-catenin-like repeat 437 474 IPR000225 GO:0005515
Vivi7g02183 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 370 IPR013083 -
Vivi7g02183 695 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 530 572 IPR000225 GO:0005515
Vivi7g02183 695 FunFam RING-type E3 ubiquitin transferase 369 523 - -
Vivi7g02183 695 SUPERFAMILY RING/U-box 282 368 - -
Vivi7g02183 695 SMART arm_5 435 475 IPR000225 GO:0005515
Vivi7g02183 695 SMART arm_5 476 517 IPR000225 GO:0005515
Vivi7g02183 695 SMART arm_5 519 559 IPR000225 GO:0005515
Vivi7g02183 695 SMART arm_5 601 642 IPR000225 GO:0005515
Vivi7g02183 695 SMART arm_5 560 600 IPR000225 GO:0005515
Vivi7g02183 695 PANTHER U BOX DOMAIN-CONTAINING 44 689 - -
Vivi7g02183 695 Gene3D - 379 694 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02183 Vivi-Chr7 84553166 84556204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02183 20 690 U-box Gene Family AT3G46510 37.537 2.44e-128 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02183 - - tpra:123924117 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02183 7 84553166 84556204 Vivi7g02183 7 84553166 84556204 ECH