Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02180 ATGGACCAACCTCTTCATCATCTTCAAGAAACCAAACCCACCGCCATCACCGTTGCTACAACCACTCCAAGCGAAACATCTAACAACAGCACTGATAACAGCAACAGTAGCAACAACAACACCAACACCAACAACACCACTATTAAGAATCGTAAATCTAAAGGTAAAGGTGGACCTGATAACAACAAATTCAGATACCGTGGTGTTAGACAACGTAGCTGGGGTAAATGGGTTGCTGAAATTCGTGAGCCTCGTAAACGTACTCGTAAATGGCTTGGCACTTTCTCTACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTATTATTCTCTACGGTTCTAGGGCTCAGCTGAATCTTCAAACCTCTGGTTCTTCGTCCAATTCTTCTCAAAACGATTCATCTTCTTCCAATCGTAACTCGTCTTCTTCTTCCGCAAATACTCTCCGTCCTTTACTTCCTCGTCCTTCTGGTTTTTCTGTTTACAATAACCTCGTACCTTTTGGTGTTTACAATAATTTCCACCATCATCATCATCATCAACAACAACAACCGGTTTTCAATAATAATAACATTCATCATCATCATCATCAACAACTGGTGCAAGTGCAACTTCAACAGCAGCAACAATATAACCAACAACAACAGATTCAAGATTTTGAGCAACATGCAAGTGGTGGTTCAACTTCTGCTAGGTCAATTACCTCGTACCAGAATATTCATGGTGTTTGTAATGATCAAGAACAACATGCAGAAGATGTTTTGAATCAGCAACAGAAGAATACTACTAATAATAATAATAATGTTCAGAATTGTGATGTGGATGAGGGAATTATGAACAGTTCAAATTTGATGGGTTCATCAAGTCTTGATGGAACAGTGGTGGATCCAGATCCAGAAGGTGTTTGTGTTGGTTCTCCAAATTCTATGTGGCCTTTGACAAGTGATTTATGGGATTATAATGATCCTCTCTTCTTTGATTTTTGA 990 0.3949 MDQPLHHLQETKPTAITVATTTPSETSNNSTDNSNSSNNNTNTNNTTIKNRKSKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQTSGSSSNSSQNDSSSSNRNSSSSSANTLRPLLPRPSGFSVYNNLVPFGVYNNFHHHHHHQQQQPVFNNNNIHHHHHQQLVQVQLQQQQQYNQQQQIQDFEQHASGGSTSARSITSYQNIHGVCNDQEQHAEDVLNQQQKNTTNNNNNVQNCDVDEGIMNSSNLMGSSSLDGTVVDPDPEGVCVGSPNSMWPLTSDLWDYNDPLFFDF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02180 329 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Vivi7g02180 329 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
Vivi7g02180 329 MobiDBLite consensus disorder prediction 53 67 - -
Vivi7g02180 329 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Vivi7g02180 329 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Vivi7g02180 329 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Vivi7g02180 329 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Vivi7g02180 329 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Vivi7g02180 329 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Vivi7g02180 329 MobiDBLite consensus disorder prediction 122 152 - -
Vivi7g02180 329 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 292 - -
Vivi7g02180 329 MobiDBLite consensus disorder prediction 1 68 - -
Vivi7g02180 329 MobiDBLite consensus disorder prediction 122 154 - -
Vivi7g02180 329 FunFam Ethylene-responsive transcription factor 2 65 123 - -
Vivi7g02180 329 MobiDBLite consensus disorder prediction 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02180 Vivi-Chr7 84485267 84486613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02180 51 329 AP2-EREBP Transcription Factor Family AT2G40220 43.377 2.51e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi7g02180 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02180 K09286 - qsu:112015561 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02180 7 84485267 84486613 Vivi7g02180 7 84485267 84486613 ECH