Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02178 ATGATTAGCTCGAATTCCAACGGCGATGACGAGAGCGGCGATAAAGTGAGAGGCTCGTGGAGTCCGCAAGAAGATGACACATTGAGGAGATTGGTGAAGGAATACGGTCCACGAAACTGGTCGGTGATAAGCAACGGAATCCCCGGCCGTTCTGGAAAATCTTGCCGTCTGCGGTGGTGCAATCAGCTGAGTCCCGACGTTCAACACCGTGCTTTTACCCCCGAGGAAGATAACATCATAATCCAAGCGCACGCGGTTCACGGCAACAAATGGGCGACGATTTCTCGTCTTCTCCCCGGTCGAACAGACAACGCGATAAAAAACCACTGGAACTCTACCCTCCGCCGTCGTCTCACGGAGGCGCCGCTGACTCCTTCCCCCGTGAGTATCGTGAAGCGTCCTCCAAGCGGTTATAACGATTTGTTAGATCTCCGTTATCGTTATAAACGGCCTTGTTTGGAGAATAACGGTTCTCGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGAAGACGTTGGTAACGATGTGGCCGTTATGACGCCGTTGAGTTTGTTTCCGCCTGGTGAGAAATTGTTGAAGGAAGAAAGAGAGAAAAAAGAAGAGATGAATAACGGTGTTAAGTTGTCGGGGAATGATAGTTTGAGGTCGATTATTCAGCGCATGATAGCAGAGGAAGTTAGGAATTATATTGATAACATGCGCTTTGATGGGTTTCAACATGCTCCTGATTCAACACATCGAAAGTGA 753 0.4887 MISSNSNGDDESGDKVRGSWSPQEDDTLRRLVKEYGPRNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRAFTPEEDNIIIQAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRLTEAPLTPSPVSIVKRPPSGYNDLLDLRYRYKRPCLENNGSRSRDGEETVTEEEEDVGNDVAVMTPLSLFPPGEKLLKEEREKKEEMNNGVKLSGNDSLRSIIQRMIAEEVRNYIDNMRFDGFQHAPDSTHRK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02178 250 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vivi7g02178 250 PANTHER MYB PROTEIN-RELATED 17 176 - -
Vivi7g02178 250 Pfam Myb-like DNA-binding domain 17 63 IPR001005 -
Vivi7g02178 250 Pfam Myb-like DNA-binding domain 71 113 IPR001005 -
Vivi7g02178 250 Gene3D - 71 118 - -
Vivi7g02178 250 CDD SANT 19 61 IPR001005 -
Vivi7g02178 250 ProSiteProfiles Myb-like domain profile. 12 63 IPR001005 -
Vivi7g02178 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Vivi7g02178 250 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vivi7g02178 250 FunFam Transcription factor MYB44 71 117 - -
Vivi7g02178 250 CDD SANT 71 114 IPR001005 -
Vivi7g02178 250 Gene3D - 16 68 - -
Vivi7g02178 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vivi7g02178 250 MobiDBLite consensus disorder prediction 1 23 - -
Vivi7g02178 250 MobiDBLite consensus disorder prediction 153 173 - -
Vivi7g02178 250 SMART sant 16 65 IPR001005 -
Vivi7g02178 250 SMART sant 68 116 IPR001005 -
Vivi7g02178 250 FunFam MYB transcription factor 17 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02178 Vivi-Chr7 84400139 84401382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02178 14 119 MYB Transcription Factor Family AT4G37260 73.585 6.67e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g02178 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02178 - - cam:101514420 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02178 7 84400139 84401382 Vivi7g02178 7 84400139 84401382 ECH