Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02168 ATGTGCAGTGGTTCAAAGAGTAAAATTTCTTCATCGGATTACGCCATGGAGAGTAAGCTTGAGAAGGGTATTCACAACTCATCAGTATTGCTTGAATTGGCTGCTGCTGATGATTTCAATGCTTTCGCACGAGAAGTGGAAGAGAAGGGTTTGGATTTGAATGAAGAAGGGTTTTGGTATGGTAGGAGAATTGGGTTGAAGGAGATGGGAGCTGAGAAGAGGACTCCGCTCATGATTGCTTCTTTGTTTGGAAGTATTAAGGTGGTTAAGTATATTGTTTTGACAGGAAAGGTTGATGTTAATGGAGTTTGTGGTTCTGATATGGTTACTGCTCTTCATTGTGCTGTTGCCGGTGGTTCGGAGTCATCGTTTGAGGTTGTCAAGCTTTTGCTTGAGGCTGGGGCGGATGCCGATTGTGTTGATGCTGGTGGGAATAAGCCGGTTGATTTGATTGTGCCTGCTTTTAATGCTTTGTTGAAATCGCGTAGGAAGGTGTTGGAGCTGTTTCTGAGAGGTGAGGTGAGTGCCGAACTCGTCCAAGGGGAGATGGATGTTCCTTTGAAAAAAGATGGTGGTGATAAGAAAGAGTATCCTATTGATATATCGTTGCCGGATATAAACAACGGTGTATATGGATCGGATGAGTTTAGGATGTATAGTTTCAAGGTGAAACCGTGTTCGAGGGCTTATTCTCACGATTGGACTGAGTGTCCTTTTGTTCATCCAGGTGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGTTCCTGCCAGAAAGGCGATTCTTGCGAGTATGCTCACGGTGTTTTTGAGTCATGGCTTCATCCTGCACAATACCGAACAAGGCTTTGTAAGGATGAAACTGGCTGTAACAGAAAAGTATGCTTCTTTGCTCACAAGCCTGAAGAGCTTCGTCCCGTGTATGCTTCCACTGGGTCCGCTATGCCCTCACCGAAATCTTATTCAGCTAGTGCACTTGACATGACATCGATGAGTCCGTTGTCTCTTAGTTCTTCATCTATGCCTATGTCAACCGTGTCAACGCCGCCCATGTCTCCCTTGGCAGGTTCATCGTCTCCCAAGGGCGGAAACTTGTGGCAGAACAAATTAAACCTCACTCCACCATCGTTGCAGCTCCCCGGTAGTCGGTTGAAGAGTGCTCTGAGCGCCAGGGATCTAGATCTCGAGATGGAACTGCTCGGTCTAGATAGTCCTCGCCGTCAACAACAGCACCAACAACAACAGCAGCAGCAAATGATTGAAGAGATTGCGAGAATCTCTTCCCCATCTTTCCGGAGCAACGAATTCAACAGGATTGTTGATTTGAATCCAACTAACCTCGATGATCTATTAGCATCTGCTGATCCTAATTTACTATCTCAACTACATGGACTTTCCATGCAACCCTCAACACCCACACAACAAATGCAATCTCCAACTGCCATGCAGATGCGTCAAAACATGAACATGAGCCAGAACATGAACATGAACCACCTTCGCGCTAGTTATCCATCCAACAACACACCTTCCTCTCCAGTAAGAAAACCCTCAGCATACGGATTTGATTCATCAGCTGCCGTGGCTGCTGCAGTGATGAACTCCAGGTCTGCCGCCTTCGCAAAGCAACGCAGCCAGAGTTTCATTGACCGCGGCGCATCAACTCACCATCTCGGGCTTTCTCCACCTTCCAACCCTTCCTGCAGAGTCTCCTCCGGCCTTTCAGATTGGGGTTCCCCCACCGGGAAACTCAACTGGAGCGTAAACGGAGACGAGCTGAACAAGCTAAGGAAATCAGCTTCTTTCGGGTTCAGAAACAACCCGGCACCATCAACTATATCATCCCAACAGAGTGAGCCTGATGTCTCTTGGGTTAACTCATTGGTCAAGGATGTTCCTTCTGAGAATTCTAACATGTATGGTGCTGAGAAGACGAGACAGCAGCAGCAGCAGCATCAACAGCAACAGCAGCAGTACGATCTGAATAGAGAAATGCTTCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAACAGATGGTTGCATGA 2082 0.4736 MCSGSKSKISSSDYAMESKLEKGIHNSSVLLELAAADDFNAFAREVEEKGLDLNEEGFWYGRRIGLKEMGAEKRTPLMIASLFGSIKVVKYIVLTGKVDVNGVCGSDMVTALHCAVAGGSESSFEVVKLLLEAGADADCVDAGGNKPVDLIVPAFNALLKSRRKVLELFLRGEVSAELVQGEMDVPLKKDGGDKKEYPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASALDMTSMSPLSLSSSSMPMSTVSTPPMSPLAGSSSPKGGNLWQNKLNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQHQQQQQQQMIEEIARISSPSFRSNEFNRIVDLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMQSPTAMQMRQNMNMSQNMNMNHLRASYPSNNTPSSPVRKPSAYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGASTHHLGLSPPSNPSCRVSSGLSDWGSPTGKLNWSVNGDELNKLRKSASFGFRNNPAPSTISSQQSEPDVSWVNSLVKDVPSENSNMYGAEKTRQQQQQHQQQQQQYDLNREMLPPWVEQLYIEQEQMVA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02168 693 PANTHER UNKEMPT FAMILY MEMBER 32 643 IPR045234 -
Vivi7g02168 693 SUPERFAMILY Ankyrin repeat 30 149 IPR036770 -
Vivi7g02168 693 Gene3D - 17 164 IPR036770 -
Vivi7g02168 693 FunFam Zinc finger CCCH domain-containing protein 66 213 281 - -
Vivi7g02168 693 ProSiteProfiles Zinc finger C3H1-type profile. 255 282 IPR000571 GO:0046872
Vivi7g02168 693 SMART ANK_2a 107 139 IPR002110 GO:0005515
Vivi7g02168 693 SMART ANK_2a 72 102 IPR002110 GO:0005515
Vivi7g02168 693 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Vivi7g02168 693 MobiDBLite consensus disorder prediction 564 594 - -
Vivi7g02168 693 MobiDBLite consensus disorder prediction 344 382 - -
Vivi7g02168 693 MobiDBLite consensus disorder prediction 644 669 - -
Vivi7g02168 693 Pfam Ankyrin repeats (3 copies) 70 139 IPR002110 GO:0005515
Vivi7g02168 693 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Vivi7g02168 693 SMART c3hfinal6 290 313 IPR000571 GO:0046872
Vivi7g02168 693 SMART c3hfinal6 255 281 IPR000571 GO:0046872
Vivi7g02168 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 280 IPR000571 GO:0046872
Vivi7g02168 693 Gene3D - 256 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02168 Vivi-Chr7 84266033 84268984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02168 25 688 C2H2 Transcription Factor Family AT5G12850 40.685 8.70e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g02168 Ank_2 2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02168 - - gmx:100783376 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g02168 7 84266033 84268984 Vivi7g02168 7 84266033 84268984 ECH