Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02135 ATGGTTCAACAGCAGCTCCTCCACCGTGTTGATCCCAAAATATGGCAACAATGTGCCGGCGATTCCGTCACTGTTCTGAAGCTGAATTCCAAACTCTATTATTTTCCTCGAGGTCATTTGGAACATGCTTGCCCTAACTACCCTTCCACTCAAGCACTCTCCCTCATTGATGCCTGCCGTCCGTTCATCCAATGCGTGGTTTCCAATGTTGATCTCTTTGCAGATTCTAAAACTGATGAACTTGTTGCAAAGCTACTCCTAACTCCCGTAATTGACGGTAGTAATGTACCTTCGGAGGCTGGCGACATAGAAGATGATGATGATCAGATTGTTTCCTATGCTAAGACTTTAACTCAATCTGATGCTAATAATGGTGGTGCATTTTCCATACCTGTCAAATGCGCTAAATTTATCTTCCCACCACTTGACTACAACACTGAATCGCCGTCTCAAATTGTATCAGTCACTGACTTTCACGGCAGGGTCTGGAATTTTCGCCATGTGTACTCCGGGACACCCAAGCGGCACTTAATCACCCATGGCTGGAGTACTTTTTCTAACGATAAGAAACTAGTCGGCGGTGATACTGTTGTTTTTGTTAAAAACTTAACCGGAAATATCACCATTGGACTTCGCCGGAGAAACAGGTCTTCGGCGGCTGCTAACATATCCGAAAAGGCAGTTATCAAGGCTGTAGAATTGGCAGAGAAGAATGCTGCGTTTGAGGTAATGTACTATCCGACGGTCGGTGGTTTTGATTTTGTGGTGGGAACTAAGGCTGTGGAGGATGCAAGGAAAATCAATTGGAACCCTGGAATGAGTGTTAAATACACTGTAAAAACCAATGGTGATAATTCAAAAGGGTGTTCAATTTTTCATGGGACAATATCTTCTATCGCTCCTCCTTGTATTAGTCCATGGCGCATGCTTGAGGTTAATTGGAATGAATCTACGGTTTTTGGAAATCTAGGGAAAGTAAGTCCATGGCAGGTTGAAATTATTTCCAACAAACCTATTATGCATCTACGATCTCCTCCAACGAAAAAGCTTAGAGTTTCTCAGAATTCAAACCTCTCTATTACAATGGGAGAGTTCAACAACGCATCAACGAGTCGTTTGAATCAAACATCAACTCCTTTCAACTTTTTGAAAGATGATTCAATAACTGAATTGGATAATGTGACAACAGAGAATAACATCAGTAGTTCTCTATCGAATGACTTGTCAGCTGATTCTAGTAGTGATTGCAACAACAAAGAGGTTACTTATTCATCAATTATGTTATTTGGTAAGAGGATAATAGGTGTTAGAAATGCATGA 1320 0.4144 MVQQQLLHRVDPKIWQQCAGDSVTVLKLNSKLYYFPRGHLEHACPNYPSTQALSLIDACRPFIQCVVSNVDLFADSKTDELVAKLLLTPVIDGSNVPSEAGDIEDDDDQIVSYAKTLTQSDANNGGAFSIPVKCAKFIFPPLDYNTESPSQIVSVTDFHGRVWNFRHVYSGTPKRHLITHGWSTFSNDKKLVGGDTVVFVKNLTGNITIGLRRRNRSSAAANISEKAVIKAVELAEKNAAFEVMYYPTVGGFDFVVGTKAVEDARKINWNPGMSVKYTVKTNGDNSKGCSIFHGTISSIAPPCISPWRMLEVNWNESTVFGNLGKVSPWQVEIISNKPIMHLRSPPTKKLRVSQNSNLSITMGEFNNASTSRLNQTSTPFNFLKDDSITELDNVTTENNISSSLSNDLSADSSSDCNNKEVTYSSIMLFGKRIIGVRNA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02135 439 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Vivi7g02135 439 Gene3D - 110 214 IPR015300 -
Vivi7g02135 439 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Vivi7g02135 439 Gene3D - 269 338 - -
Vivi7g02135 439 Pfam Auxin response factor 231 310 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g02135 439 SMART B3_2 113 215 IPR003340 GO:0003677
Vivi7g02135 439 CDD B3_DNA 112 199 IPR003340 GO:0003677
Vivi7g02135 439 SUPERFAMILY DNA-binding pseudobarrel domain 108 216 IPR015300 -
Vivi7g02135 439 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 378 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02135 Vivi-Chr7 83536226 83537545 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02135 8 354 B3 DNA Binding Superfamily AT1G77850 37.121 2.14e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02135 B3 5.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02135 - - psat:127121125 588.571