Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02094 ATGGCTCAACAACAACAATTCTGCAATGTAGATCCAAGAATATGGCAAGAATGTGCAGGAGATTCTTTCACTGTTCCTAAACTCCATTCTAGAGTTTATTATTTTCCTCTTGGTCATTTACAACACTCTCCTATTACCCCTAACATTCAAACACTCTCCCTCCTCCGCCCATTCATTCTCTGCACTGTCTCCTCTATTGATCTCCTTGCAGATCTTGAAACTGGTCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTGTTGAGGCTAGCAATCAAGAAGACAATGGTGATCGTGTCGTTTCATATGCAAAGACTATATCTAAATCTGATGCTAACAATGGTAGTGGATTCTATGTACCTCGGGCCTGCGCTAACTCAATCTTTCCCCCGCTTGACTTGACAACTCCATCGTCATCTCAAGAACTTTCTGTCACTGATGTTTGCGGTGTTGTGTGGACCATTCGCCACGTTCATGGCTGGAATCCCAAGCGACACCTATTCACCACCGGCTGGAGTGCATTTGTTAAGAAGAAGCATCTTGTCGGCAGGGATACCCTTGTTTTCATTAAAAACTCGGCTGGAAAGATATTTGTTGGAATCCGCCGCCATAATATGTCTGCAGCTGCTAGTAAAATAACTGAAAAGACAGTTATCAATGCGGTAGAATTGGCTAAGACGAATACACCATTTGAAGTCATGTGTTATCCGACGGTTGATGGTTTTGATTTTGTGGTGGAAGATAAAGTTGTGGAGAAAGCCATAAAGGTTAATTGGAATACTGGAATGAGAGTTACACACAAAGTTAAGGGAGGCTCAATTTTTCATGGGACAATTTCTGCAATCTCCCATCCTTCAACTCATCCATGGCGCATGCTACAAGTTGAATGGGATGAACCCAATGTCTCGAAGAATCTAAAGCGTGTAAGTCCGTGGCAGGTTAAACCTGATGTTAGCATACCTCTACTACATCAACAGTTTCCCTTGAATTTGGATGGCATGCTGGGAGTCAGGCAAAATCATTTTTCTGGATCCACTTCTTCCAACTCTTTGAAAGATAGGTTGGAAATGATTGCAGAAGCAATTTACAAGGTTGGACTTTATGGTGTTTTGGCCATCAAGTATTCCTCCTCATTTGAAACAACAGTTGAAGTTGATGTTGCAATAACATTTATGGTAATGTCCATTCCTGATAATCTGGGTAGTCTTAATCATATCAAATGA 1242 0.4163 MAQQQQFCNVDPRIWQECAGDSFTVPKLHSRVYYFPLGHLQHSPITPNIQTLSLLRPFILCTVSSIDLLADLETGQIFAKLLLTPVIDATVVPVEASNQEDNGDRVVSYAKTISKSDANNGSGFYVPRACANSIFPPLDLTTPSSSQELSVTDVCGVVWTIRHVHGWNPKRHLFTTGWSAFVKKKHLVGRDTLVFIKNSAGKIFVGIRRHNMSAAASKITEKTVINAVELAKTNTPFEVMCYPTVDGFDFVVEDKVVEKAIKVNWNTGMRVTHKVKGGSIFHGTISAISHPSTHPWRMLQVEWDEPNVSKNLKRVSPWQVKPDVSIPLLHQQFPLNLDGMLGVRQNHFSGSTSSNSLKDRLEMIAEAIYKVGLYGVLAIKYSSSFETTVEVDVAITFMVMSIPDNLGSLNHIK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02094 413 Pfam B3 DNA binding domain 110 210 IPR003340 GO:0003677
Vivi7g02094 413 Gene3D - 106 210 IPR015300 -
Vivi7g02094 413 SMART B3_2 109 211 IPR003340 GO:0003677
Vivi7g02094 413 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Vivi7g02094 413 CDD B3_DNA 108 209 IPR003340 GO:0003677
Vivi7g02094 413 Gene3D - 261 327 - -
Vivi7g02094 413 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 334 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g02094 413 Pfam Auxin response factor 227 299 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g02094 413 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02094 Vivi-Chr7 82970190 82972553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02094 10 334 B3 DNA Binding Superfamily AT1G77850 36.870 9.81e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02094 B3 7.9e-15 CL0405