Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02093 ATGGCTCAACAACAACAATTCTGCAATGTTGATCCAAGAATATGGCAAGAATGTGCAGGAGATTCTTTCACAGTTCCTAAACTTCATTCTAGAGTTTATTATTTTCCACATGGTCATTTAGAACACTCTCCTGTAACCCCTACCACTCAAACACTCTCCCTCCTTCGCTCATTCATTCTTTGCACTGTCTCCTCTATTGATTTTCTTGCAGATCTTGAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTCCTGTTGAGGCTAGCAATCAAGAAGACAATGGTGATCGTGTCGTTTCATATGCAAAGACTATATCTAAATCTGATGCTAACAATAAGGGTTCATTCTATATACCTCGGGCCTGCGCCGACTCAATCTTTCCGCCGCTTGACTTGACAACTCCATCGCCATCTCAAGAACTTTCTATCACTGATGTTTGCGGTGTTGTCTGGACCATTTCCCACGTCCATCGAGGGAATCCCGAGCGATACCTATTCACCACCGGATGGAATGCATTTGTTAAGAAGAAGCATCTTGTCGCCGGAGATACCCTTGTTTTCATTAAAAACTCGGCTGGAAAGATATTTGTTGGAATCCGCCGCCACAATATGTCTGCAGCCGCTAGTAAAATAACCGAAAAGACAGTTATCAATGCAGTAGAATTGGCTAAGAAGAATACACCATTTGAAGTCATGTGTTATCCGACGGTGGATGGTTTTGATTTTGTGGTGGAACATGAAGTTGTGAAGAATGCCATAAAGGTTAATTGGAATACTGTATTGAGAGTTACACACACAGTTAAGGGAGGCTCAACTTTTCATGGGACAATATCTGGATTCTCCCATCCTTCAACTCATCCATGGCGCATGCTACTGGTTGAATGGGATGAACCCAATGTCTCGAAGAATCTAAAGTGTGTAAGTCCGTGGCAGTATTTAAATGATGAGATCATTTACTACAGTTTTATTGATGATTTGCAAACTCATAAAATGTTGCTGATTTTGAGAAATCAGATTTCTGTTGCTGAGATGGATCCTTCAAGCATTGGCTAA 1080 0.4139 MAQQQQFCNVDPRIWQECAGDSFTVPKLHSRVYYFPHGHLEHSPVTPTTQTLSLLRSFILCTVSSIDFLADLETDQIFAKLLLTPVIDATVVPPVEASNQEDNGDRVVSYAKTISKSDANNKGSFYIPRACADSIFPPLDLTTPSPSQELSITDVCGVVWTISHVHRGNPERYLFTTGWNAFVKKKHLVAGDTLVFIKNSAGKIFVGIRRHNMSAAASKITEKTVINAVELAKKNTPFEVMCYPTVDGFDFVVEHEVVKNAIKVNWNTVLRVTHTVKGGSTFHGTISGFSHPSTHPWRMLLVEWDEPNVSKNLKCVSPWQYLNDEIIYYSFIDDLQTHKMLLILRNQISVAEMDPSSIG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02093 359 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Vivi7g02093 359 CDD B3_DNA 109 210 IPR003340 GO:0003677
Vivi7g02093 359 Gene3D - 253 324 - -
Vivi7g02093 359 Pfam B3 DNA binding domain 111 211 IPR003340 GO:0003677
Vivi7g02093 359 Pfam Auxin response factor 228 298 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g02093 359 Gene3D - 107 211 IPR015300 -
Vivi7g02093 359 SUPERFAMILY DNA-binding pseudobarrel domain 106 213 IPR015300 -
Vivi7g02093 359 SMART B3_2 110 212 IPR003340 GO:0003677
Vivi7g02093 359 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 321 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02093 Vivi-Chr7 82956816 82958518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02093 10 320 B3 DNA Binding Superfamily AT1G77850 36.915 1.08e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02093 B3 3.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02093 - - vvo:131619503 584.719