Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02089 ATGGCTCTACAACAACAATTACTTAATGTAGATCCAAATATTTGGCTACAATTTGCTAGAGATTCTTTCACAGTTCCCAAACTTCATTCTAGAGTTTATTATTTTCCTCCTGGTCATTTAGAACATTCTCCTATTACCCCTACCACTCAAACACTCTCCCTCCTCCGCCCATTCATTCTCTGCACTGTCTCCTCTGTTGATCTCCTTGCAGATCCTCAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTCCTGTCGAGGTTATCAACGAACAAGACAATGCTGATCATGTTGTTTCCTCTGCCAAGACTCTAACTACGACTGATGCTAACAATGCATGTGGATTCTCTGTACCTAAGGCCTGCTCCGTCTCAATCTTTCCGCCGCTTGACTTGACAACTCCATGGCCGTCTCAAGAACTCTCCATCACTGATGTTTGCGGTGTTGTATGGACTTTTAACCATGTCTATCGCGGAAATCCCAAGCGATACCTATTCACCACTGGCTGGAGTGCATTTGTTGACAAGAAGACACTCGTCGGCGGTGATACCCTTGTTTTCATTAAAAACTCCACTGGAAATATATTTGTTGGAATCCGCCGCCAAAATGCTGCTAAAAGAATAATAGAAAAGAACGTTGTCGTTGCCAATGCAGTAGAATTGGCTGGGAAGAACACGCCATTTGAAGTCATGTGTTATCCGACGATTGATGGTTTTGATTTTGTGGTTGAAGATAAAGTTGTGGAAGATGCAATGAGGATTCATTGGTATCCTGGAATGAGAGTTACACACACAGTGAAGGGAGGCTCAACTTTTCATGGGACAATATCTGCAATCTCCTATCCTTCAACTCATCCATGGCGCACGCTACAGGTTGAATGGAATGAACCTAACGTCTCGGAGAATCTAAAGCATGTAAGTCCGTGGCAAGTGGAACCTGATTTTAGCACACCTCTACTGCATCAACTATTCCCTCCAACAAAACGGCTAAGAGCTGCTCAAGAATCTGCCCTACTAAGTGATACCGAAAGAATTTCTTCTATTTCAAAGGTAGAATTCAGTAACTTTTTAATGAAATCCTTGAATCAAACACCATTGGATTTCGATGGCATGCTGGGAGTCAGGCAAAATCATATTTTGGGATCCAATTCTTGCAACTCTTTGAAAGGTAGTTCATTTGAGAAAAGTTCAACGAAAGAAACTGATAATGTGTCAAATGAGATAAACACTACCAATCATATAATACTATTTGGTCAGATCGTGCGTCCCGCTGAAAAAAGTTTCAATGATTCTGCTATTAAGCGGGCTGATGGTCGTGAGATGCACAATGAAGTTGATGATAGCTCACCAAGTTTTTTAGAAAATTGTTAA 1398 0.4149 MALQQQLLNVDPNIWLQFARDSFTVPKLHSRVYYFPPGHLEHSPITPTTQTLSLLRPFILCTVSSVDLLADPQTDQIFAKLLLTPVIDATVVPPVEVINEQDNADHVVSSAKTLTTTDANNACGFSVPKACSVSIFPPLDLTTPWPSQELSITDVCGVVWTFNHVYRGNPKRYLFTTGWSAFVDKKTLVGGDTLVFIKNSTGNIFVGIRRQNAAKRIIEKNVVVANAVELAGKNTPFEVMCYPTIDGFDFVVEDKVVEDAMRIHWYPGMRVTHTVKGGSTFHGTISAISYPSTHPWRTLQVEWNEPNVSENLKHVSPWQVEPDFSTPLLHQLFPPTKRLRAAQESALLSDTERISSISKVEFSNFLMKSLNQTPLDFDGMLGVRQNHILGSNSCNSLKGSSFEKSSTKETDNVSNEINTTNHIILFGQIVRPAEKSFNDSAIKRADGREMHNEVDDSSPSFLENC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02089 465 Gene3D - 109 211 IPR015300 -
Vivi7g02089 465 SMART B3_2 110 212 IPR003340 GO:0003677
Vivi7g02089 465 CDD B3_DNA 112 210 IPR003340 GO:0003677
Vivi7g02089 465 SUPERFAMILY DNA-binding pseudobarrel domain 111 214 IPR015300 -
Vivi7g02089 465 Pfam Auxin response factor 227 297 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g02089 465 Gene3D - 264 326 - -
Vivi7g02089 465 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Vivi7g02089 465 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 431 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g02089 465 Pfam B3 DNA binding domain 112 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02089 Vivi-Chr7 82860469 82861957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02089 10 343 B3 DNA Binding Superfamily AT1G77850 37.209 6.68e-80 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02089 B3 6.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02089 - - psat:127121973 625.165