Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02088 ATGGCTCAACAACAACAATTCTGCAATGTAGATCCAAGAATATGGCAAGAATGTGCAGGAGATTCTTTCACTGTTCCCAAACTCCATTCTAGAGTCTATTATTTTCCTCTTGGTCATTTACAACACTCTCCTATAACACCTAACATCCAAACACTCTCCCTCCTCCGCCCATTCATTCTTTGCACAGTCAGCTCTATTGATTTTCTTGCAGATCTTGAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTATTGAGGCTAGCAATCAAGAAGACAATGGTGATCGTGTCGTTTCATATGCAAAGACTATATCTAAATCTGATGCTAACAATGGAGGTGGATTCTATGTACCTCGGGCCTGCGCTAACTCAATCTTTCCGCCGCTTGACTTGACAACTCCATTGTCATCTCAAGAACTTTCTGTCACCGATGTTTGCGGTGTTGTCTGGACCATTCGCCACGTTCATGGCTGGCATCCCAAGCGACACCTACTCACCACCGGCTGGACTGCATTTGTTAAGAAGAAGCATCTTGTTGGCGGGGATACCCTTGTTTTCATTAAAAAGTCGGCTGGAAAGATATTTGTTGGAATCCGCCGCCATAATATGTCTGCAGCCGCTAGTAAAATAACCGAAAAGACAGTTATCGATGCTGTAGAATTGGCTAAGACGAATACACCATTTGAAGTCATGTGTTATCCCAGGGTTGATGGTTTTGATTTTGTGGTGGAAGATAAAGTTGTGGAGAATGCCATAAAGGTTAATTGGAATACTGGAATGAGAGTTACACACAAAGTTAAGGGAGGCTCAATTTTTCATGGGACAATATCTGCATTCTCCCATCCTTCAACTCATCCATGGCGCATGCTACGGGTTGAATGGGATGAACCCAATGTCTCGAGGAATCTAAAGCGTGTAAGTCCGTGGCAGGTTAAACCTGATGTTAGCATACCTCTACTACATCAACAGTTTCCCTTGAATTTGGATGGCATGCTGGGAGTCAGGCAAAATCATTTTTCTGGATCCACTTCTTCCAACTCTTTGAAAGATAGGTTCATTTGA 1089 0.4298 MAQQQQFCNVDPRIWQECAGDSFTVPKLHSRVYYFPLGHLQHSPITPNIQTLSLLRPFILCTVSSIDFLADLETDQIFAKLLLTPVIDATVVPIEASNQEDNGDRVVSYAKTISKSDANNGGGFYVPRACANSIFPPLDLTTPLSSQELSVTDVCGVVWTIRHVHGWHPKRHLLTTGWTAFVKKKHLVGGDTLVFIKKSAGKIFVGIRRHNMSAAASKITEKTVIDAVELAKTNTPFEVMCYPRVDGFDFVVEDKVVENAIKVNWNTGMRVTHKVKGGSIFHGTISAFSHPSTHPWRMLRVEWDEPNVSRNLKRVSPWQVKPDVSIPLLHQQFPLNLDGMLGVRQNHFSGSTSSNSLKDRFI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02088 362 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Vivi7g02088 362 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Vivi7g02088 362 Pfam B3 DNA binding domain 110 210 IPR003340 GO:0003677
Vivi7g02088 362 Pfam Auxin response factor 227 297 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g02088 362 Gene3D - 261 326 - -
Vivi7g02088 362 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 327 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g02088 362 CDD B3_DNA 108 209 IPR003340 GO:0003677
Vivi7g02088 362 SMART B3_2 109 211 IPR003340 GO:0003677
Vivi7g02088 362 Gene3D - 106 210 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02088 Vivi-Chr7 82858067 82859404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02088 10 334 B3 DNA Binding Superfamily AT1G77850 38.095 6.74e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02088 B3 4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02088 - - vvo:131619501 743.421