Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02086 ATGGCTCTACAACAACAATTACGTAATGTAGATCCAAATATTTGGCTACAATTTGCTAGAGATTCTTTCACAGTTCCTAAACTCCATTCTAGAGTTTATTATTTTCCTCCTGGTCATTTAGAACATTCTCCTGTAACCCCTACCACTCAAACTCTCTCCCTCCTCCGCCCATTCATTCTTTGCACTGTCTCCTCCATTGATCTCCTTGCAGATCCTCTAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTCCTGTCGAGGCTGTCAACGAAGAAGACAATGCTGATCATGTTGTTTCCTCTGCCAAGACTCTAACTACGACTGACGCTAACAATGCATGTGGATTCTCTGTACCTAAGGCCTGCGCCAACTCAATCTTTCCGCCGCTTGACTTGACAACTCCATGGCCGTCTCAAGAACTCTCCATCACTGATGTTTGCGGTGTTGTATGGACTTTTCAACATGTCTATCGCGGGAATCCCAAGCGATACCTATTCACCACTGGCTGGAGTGCATTTGTTAACAAGAAGACACTAGTCGGTGGTGATACCCTTGTTTTCATTAAAAACTCGGCTGGAAACATATTTGTTGGTATCCGCCGCCAAAATGCTGCTAAAAAAATAATAGAAAAGAACGCTAACAATGCAGTAGAATTGGCTGGGAAGAACGAACCATTTGAAGTCATGTGTTATCCGACGATTGATGGTTTTGATTTTGTGGTGGAAGATAAAGTTGTGGAAGATGCAATGAAGATTCATTGGAATCCAGGAATGAGAGTTACACACACAGTGAAGGGAGGCTCAACTTTTCATGGGACAATATCTGCAATCTCCTATCCTTCAACTCATCCATGGCGCACGCTACAGGTTGAATGGAATGAACCTAACGTCTCGGAGAATCTAAAGCATGTAAGTCCGTGGCAGGTGGAACCTGATTTTAGCACACCTCTACTGCATCAACTATTCCCCCCAACAAAACGGCTAAGAGCTGCTCAAGAATCTGCCATACTAAGTGATACCGAAAGAATTTCTGCTATTTCAAAGGTAGAACTCAGTAACTTTTTAATGAAATCCTTGAATCAAACACCATTGGATTTCGATGGCATGCAGGGAGTCAGGCAAAATCATATTTTGGGATCCAATTCTTCCAACTCTTTGAAAGATACTTCATTTGAGAAAAGTTCATTGAAAGGGACTTATAATGTGTCAAATGAGATAAACACTACCAGTCATATAATACTATTTGGTCAGATCGTGCGTCCCGCTGAAAAAAGTTTTGATGATTATGCTATTAAGCGAGATGATGGTCCTGAGATGCGCAATGAAGTTGAAGATCAAGTCAAAGCTGTTGAAAAAAATAGCTCGACAAGTTTTTAG 1404 0.4167 MALQQQLRNVDPNIWLQFARDSFTVPKLHSRVYYFPPGHLEHSPVTPTTQTLSLLRPFILCTVSSIDLLADPLTDQIFAKLLLTPVIDATVVPPVEAVNEEDNADHVVSSAKTLTTTDANNACGFSVPKACANSIFPPLDLTTPWPSQELSITDVCGVVWTFQHVYRGNPKRYLFTTGWSAFVNKKTLVGGDTLVFIKNSAGNIFVGIRRQNAAKKIIEKNANNAVELAGKNEPFEVMCYPTIDGFDFVVEDKVVEDAMKIHWNPGMRVTHTVKGGSTFHGTISAISYPSTHPWRTLQVEWNEPNVSENLKHVSPWQVEPDFSTPLLHQLFPPTKRLRAAQESAILSDTERISAISKVELSNFLMKSLNQTPLDFDGMQGVRQNHILGSNSSNSLKDTSFEKSSLKGTYNVSNEINTTSHIILFGQIVRPAEKSFDDYAIKRDDGPEMRNEVEDQVKAVEKNSSTSF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02086 467 Gene3D - 109 211 IPR015300 -
Vivi7g02086 467 CDD B3_DNA 112 210 IPR003340 GO:0003677
Vivi7g02086 467 Gene3D - 262 324 - -
Vivi7g02086 467 Pfam B3 DNA binding domain 112 211 IPR003340 GO:0003677
Vivi7g02086 467 Pfam Auxin response factor 225 295 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g02086 467 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Vivi7g02086 467 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 389 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g02086 467 SMART B3_2 110 212 IPR003340 GO:0003677
Vivi7g02086 467 SUPERFAMILY DNA-binding pseudobarrel domain 111 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02086 Vivi-Chr7 82846594 82848085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02086 8 383 B3 DNA Binding Superfamily AT1G77850 36.697 5.89e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02086 B3 3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02086 - - psat:127121973 649.432