Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02066 ATGTCTCAACAGCAACACCTCCGTGTTGATCCCAAAATCTGGCAGAAAATCGCCCGAGATTCCTTCACTGTTCCAAAACTTCATTCCAAAGTATATTATTTCCCTCAAGGTCATTTACAACATGTCTGTCCTAACACTCAACCATTCTATGGTTGCCGTCCGATGATTCTCTGCATAGTCTCCGCCGTTGATCTCCTTGCAGATCCTGAAACTGATCAAGTTTATGCAAAATTACTCCTCACTCCCGTAATTGACGGAAGTGTTGTTCCTCTTGAGTCTCACAATGGACCCGATGGTGATCAAATTGTTTCCTATGCCAAGACTCTCACTAATACTGATGTTAGAAGCGGGGCTGTACTCTACATACCTAAGGCCGGTGCCGACTCGATCTTACCAGCACTCCCGCCGCTTGACTCTAGAAACCAATCGCGGTTTCAAGATATATCCGTCAAGGACGTTTGCGGTGTAGTCTCGCAAATTCGCCACTTCCACCGTCTATGTCCCTTTCAACACCTGTTCACCATTGGCTGGAGTGGATTTGTTAGCAAGAAGAATCTGGCTGCCGGTGATACAGTTGTTTTTGCTAAAAACTCGGCTGGAAATATCTCCATTGGAATTCGCAGGAAAGGGAAGTTACCTGCCACTGCAAAAATGACAGAAAAGGAAGTTAAGTTGGCAATAGAATTGGCAGAGAAGAATGCAGCATTTGAAGTTGTGTACTATCCAACGGTAGGTGGTTTTGATTTTGTGGTGGGAGCGAAGATAGTGGAGGATGCAATGAAAGTTAATTGGAGGTGTGGGATGAGAGTTACACACATGGTGAAGAATGACGACACTTCTAAGGGATGCTCCATTTTTAATGGGAGAATATCTAATCTCTCCTCTCGTTCTACTCGCCCATGGCGCATGCTTCAGGTTAAATGGGATGATCCTCATGTCCCTGAGAATCTAAAGCAATTATGTCCTTGGCAGGTTGAAGTTATTAATTCTAACCCACCTATATCAGATATACAATTCCCTCCAACAAAAAAGTTGAGAGGTGCTCAAGGTTCTGTGTTGTCAACTGAGCAAAACATTAGCAATTCTCACACCTCTAGTATTTTGAACTCCTTTAAAACAAAGAATGCTCATATTGACAATTGCAATAACAAGAAAACTAGTCCGGCTTCAATAATGTTATTTGGTAAGATGATACAACCTATTGAAAGGGATTTGTATGAGTCTTCTGATATTATAGGAGACAATAGTTGTAAGAGGAGTAATGAAATTGATAAAACTTGTTAA 1284 0.4198 MSQQQHLRVDPKIWQKIARDSFTVPKLHSKVYYFPQGHLQHVCPNTQPFYGCRPMILCIVSAVDLLADPETDQVYAKLLLTPVIDGSVVPLESHNGPDGDQIVSYAKTLTNTDVRSGAVLYIPKAGADSILPALPPLDSRNQSRFQDISVKDVCGVVSQIRHFHRLCPFQHLFTIGWSGFVSKKNLAAGDTVVFAKNSAGNISIGIRRKGKLPATAKMTEKEVKLAIELAEKNAAFEVVYYPTVGGFDFVVGAKIVEDAMKVNWRCGMRVTHMVKNDDTSKGCSIFNGRISNLSSRSTRPWRMLQVKWDDPHVPENLKQLCPWQVEVINSNPPISDIQFPPTKKLRGAQGSVLSTEQNISNSHTSSILNSFKTKNAHIDNCNNKKTSPASIMLFGKMIQPIERDLYESSDIIGDNSCKRSNEIDKTC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02066 427 Gene3D - 263 332 - -
Vivi7g02066 427 SUPERFAMILY DNA-binding pseudobarrel domain 100 210 IPR015300 -
Vivi7g02066 427 Gene3D - 102 209 IPR015300 -
Vivi7g02066 427 ProSiteProfiles B3 DNA-binding domain profile. 105 210 IPR003340 GO:0003677
Vivi7g02066 427 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 364 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g02066 427 CDD B3_DNA 104 194 IPR003340 GO:0003677
Vivi7g02066 427 Pfam B3 DNA binding domain 106 209 IPR003340 GO:0003677
Vivi7g02066 427 Pfam Auxin response factor 226 303 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02066 Vivi-Chr7 82605313 82606751 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02066 6 356 B3 DNA Binding Superfamily AT1G77850 34.483 4.43e-70 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g02066 B3 2.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02066 - - vvo:131619497 873.618