Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02060 ATGGATTTGGAAACCCTTTATTCTCCTTATTTTATGATGGATCCAAGTTGGTTTGTTGAAGAGAGTCATAACACAGAATGGAGTAGAGAAGATAACAAGAAATTTGAAAGTGCTCTTGCTATATATGATAATGATACACCTGATAGATGGTTCAAGATTGCTGAGATGATTCCTGGTAAGACTGTTTTTGATGTGATTAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATCGAAGCTGGTAATGTTCCGATTCCGGGCTATCTTGCTTCTTCTTTCACTTTTGAAGTTGTGGAAAATCAGAACTATGATGGAAATAGAAGAAGACATGGAAGTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACCGAAGAAGAACACAGACGTTTTCTGATGGGACTTCTAAAATACGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTCGTGACAAAGACTCCGACGCAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCCGGAGGGAAAGATAAAAGAAGACCAAGCATTCATGACATAACAACTCTTAGTCTCACAGAAACTTCTTCTGCATCATCAGATAAGAACAAACAAAAAATGTGCTGGAGTAATAATAGTCACTACAATGATGGATCACTTCAAGGGCAAGATCTATATGATTGCTCTTTTCATGAATCTTATGCTAAGATGAAAATCCCCGGTTTCGCGACGGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTTTAA 795 0.3849 MDLETLYSPYFMMDPSWFVEESHNTEWSREDNKKFESALAIYDNDTPDRWFKIAEMIPGKTVFDVIKQYRELEEDVSEIEAGNVPIPGYLASSFTFEVVENQNYDGNRRRHGSVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLSLTETSSASSDKNKQKMCWSNNSHYNDGSLQGQDLYDCSFHESYAKMKIPGFATASRDFNKGAVFGIHAL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02060 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Vivi7g02060 264 CDD SANT 26 72 IPR001005 -
Vivi7g02060 264 FunFam Transcription factor SRM1 19 86 - -
Vivi7g02060 264 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Vivi7g02060 264 SMART sant 123 173 IPR001005 -
Vivi7g02060 264 SMART sant 23 75 IPR001005 -
Vivi7g02060 264 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vivi7g02060 264 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vivi7g02060 264 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vivi7g02060 264 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Vivi7g02060 264 Gene3D - 125 176 - -
Vivi7g02060 264 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vivi7g02060 264 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vivi7g02060 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vivi7g02060 264 CDD SANT 126 170 IPR001005 -
Vivi7g02060 264 Gene3D - 19 86 - -
Vivi7g02060 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 227 IPR043363 -
Vivi7g02060 264 FunFam transcription factor MYB1R1 125 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02060 Vivi-Chr7 82519382 82521152 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g02060 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02060 - - cam:101492144 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02139 6 95894484 95896910 Vivi7g02060 7 82519382 82521152 ECH
Vivi7g02060 7 82519382 82521152 Vivi7g02060 7 82519382 82521152 ECH