LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g02040	ATGAGGTTGATTTATAATTTCTTCTTGATTTATTATTTATTAAAAGATATATTCAACCAAAAGATAATACTAACTTCTGTTTTTGTTTTGCAATTTAGAGATATTGTTTCCGGGGTTGTTCATTTGCATGAACTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAAACAAGGAAAAATCCCTATGTGCGAAGCTTTCTGACATGGGCATTAGCAAACGACTTCTTGAAAATATGTCCTCTTTGGGTCATAATGCTACTGGTGGGGGCAGTTCAGGTTGGCAAGCCCCAGAACAGCTTGATCAAGGACGTCAAACACGAGCTGTAGATATATTCAGTTTAGGTTGTGTTCTTTTTTTCTGTATGACTGGGGGAAGACATCCATTTGGACAAAATCTTGAACTTGACATCAATATTGTGAAAAATCGAAAGAATTTATTCTTAGTTCAGTTCATTCCGGAAGCTGAGGATCTTATTAGCTGTTTATTAAACCATGAACCTGATCTAAGGATTAGAAATGACAGCATTGGAGAAAGAGAGAGTTGGGGTTGCTATATCACCACTTTCAAAAGATCAGAAACAAGACTTTCATTTTTACGTGACACCAGTGACAGGGTGGAACTGGAAGATAGAGAGATTAGTTCTAATCTTTTGCGGGCTTTAGAAAGCATTGCTACAACAGCCTTAGGTGGTAAATGGGATGAAAAGATGGAACCAACTTTCATTGCTAACATTGGTCGTTACCGGCGCTATAAGTTTAACAGTGTTCGAGACTTGTTGCGCGTTATGAGAAACAAGCTAAATCATTATGGAGAATTGCCACAAGAAATCCAGGAACTAGTTGGACCTGTTCCTGAAGGATACAATGACTACTTTGCAAACCGATTCCCAAGACTCTTGATTGAAGTGTATAATGTCATATGCAAGCACTGCAAGGAGGAAGAGTGTTTTCAAAGGTATTTTAAAAATGATGATTAG	987	0.3718	MRLIYNFFLIYYLLKDIFNQKIILTSVFVLQFRDIVSGVVHLHELGIIHRDLKPQNVLINKEKSLCAKLSDMGISKRLLENMSSLGHNATGGGSSGWQAPEQLDQGRQTRAVDIFSLGCVLFFCMTGGRHPFGQNLELDINIVKNRKNLFLVQFIPEAEDLISCLLNHEPDLRIRNDSIGERESWGCYITTFKRSETRLSFLRDTSDRVELEDREISSNLLRALESIATTALGGKWDEKMEPTFIANIGRYRRYKFNSVRDLLRVMRNKLNHYGELPQEIQELVGPVPEGYNDYFANRFPRLLIEVYNVICKHCKEEECFQRYFKNDD	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g02040	328	SMART	PGNneu	257	311	-	-
	Vivi7g02040	328	ProSiteProfiles	KEN domain profile.	195	326	IPR010513	GO:0004540\|GO:0006397
	Vivi7g02040	328	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1	196	328	-	-
	Vivi7g02040	328	Gene3D	KEN domain	195	328	IPR038357	-
	Vivi7g02040	328	PANTHER	IRE1-RELATED	32	327	IPR045133	GO:0004521\|GO:0004674\|GO:0030968
	Vivi7g02040	328	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	47	59	IPR008271	GO:0004672\|GO:0006468
	Vivi7g02040	328	SMART	serkin_6	1	186	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g02040	328	ProSiteProfiles	Protein kinase domain profile.	1	186	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g02040	328	CDD	RNase_Ire1	196	324	-	-
	Vivi7g02040	328	Gene3D	Transferase(Phosphotransferase) domain 1	19	181	-	-
	Vivi7g02040	328	Pfam	Protein kinase domain	28	175	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi7g02040	328	Pfam	Ribonuclease 2-5A	198	324	IPR010513	GO:0004540\|GO:0006397
	Vivi7g02040	328	FunFam	Serine/threonine-protein kinase/endoribonuclease IRE1a	14	180	-	-
	Vivi7g02040	328	SUPERFAMILY	Protein kinase-like (PK-like)	22	179	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g02040	Vivi-Chr7	82081150	82083086	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g02040	1	183	AGC Kinase Gene Family	AT3G08720	31.892	2.17e-18	84.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Vivi7g02040		Pkinase	1.7e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g02040	K08852		-	vvo:131617605	662.144