Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02031 ATGTATCGTGGTGGATGGACTGAGGTTTCCTATAAGAAACGGTTCGCCCCGAAATGGGACACTTTTCCTTTTGGTGGTCGTAATCGTAACCCGTCTGCCTCGCTAGGGGAAGTTACTTCTTTGTTCGTGTCGGATTTTCCAGAAGGGACAACAGCTAAGGATTTGTTTCAGCTTTTTGGGTGTTATGGTTCGGTGGTGGAGGTGGCGATTTCACCAAGGAGGAATTCTTTTGGGAAACGATTTGGCTTTGCTCGGTTTGTGGAGGTAATCGACGGTAGACTCTTAGCTGTGCGTCTGGACAATATAATTATTGGTGGTAAGAAAATACATGTCAATTTGCCAAGATTCAAAAGGGATTCTTACAGGAGAGTTAAGGGTCATGGGGAGCCTGTGTTGGGCAAGATTGGGGTTCCACGAAATAGGTTTCACCCTGCCAGTAATGGAATTCCAAGGTCTGAGGCTCGGAAGGGCCACTCTTATGCTGAGGTCGTGGGAGGGAGTCATCAGGATAACGATTCGAAAGTATCGGAGAACATGTTGGTGCTTCAATCATCGGAAGCCTTAAGAGGCCGGTTGGAGAGAGCTTTTGTGGGCAAAGTCCGTATTCCGGGATCGGCTCATATCATCCAAACTCAATTCGAAATGGAAGGAGTTTTCGCTGTTAAAGTGTCCCCTATGGGTAGCAATTGGTGTCTGCTAGAAGAAAATGAGGAGGGCTTTATTGAAGATCTCATTGGTGAAGGAGAGGTGTGGTGGAAGACTTGGTTTTTGGAGATCAAAAAATGGGAACCTGGTGCTGTAGATCAGCATAGAGATGTGTGGATTCGGATTTACGGGATCCCTCTCCATGCTTGGAGTTCTGACTGTTTTACGGCATTGGCTGAATAA 888 0.4662 MYRGGWTEVSYKKRFAPKWDTFPFGGRNRNPSASLGEVTSLFVSDFPEGTTAKDLFQLFGCYGSVVEVAISPRRNSFGKRFGFARFVEVIDGRLLAVRLDNIIIGGKKIHVNLPRFKRDSYRRVKGHGEPVLGKIGVPRNRFHPASNGIPRSEARKGHSYAEVVGGSHQDNDSKVSENMLVLQSSEALRGRLERAFVGKVRIPGSAHIIQTQFEMEGVFAVKVSPMGSNWCLLEENEEGFIEDLIGEGEVWWKTWFLEIKKWEPGAVDQHRDVWIRIYGIPLHAWSSDCFTALAE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02031 295 CDD RRM_SF 41 112 - -
Vivi7g02031 295 SUPERFAMILY RNA-binding domain, RBD 25 123 IPR035979 GO:0003676
Vivi7g02031 295 Gene3D - 24 167 IPR012677 -
Vivi7g02031 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Vivi7g02031 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Vivi7g02031 295 SMART rrm1_1 40 112 IPR000504 GO:0003723
Vivi7g02031 295 Pfam Domain of unknown function (DUF4283) 216 294 IPR025558 -
Vivi7g02031 295 PANTHER DUF4283 DOMAIN PROTEIN 189 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02031 Vivi-Chr7 81899142 81900029 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02031 39 127 Eukaryotic Initiation Factors Gene Family AT3G16380 26.966 1.39e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02031 - - vvo:131652899 588.956