Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02019 ATGGCTCCTTCTTCTGATATCAACCATCTTTCTCATCCATGTATATATGGAGATTATGTTTCTTCACACCCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGTGGGCCTAATAATAGAGGAAGGAGCGGTCGTCATCTTCATGACTCTTCCGAAGAAAGCATGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGGTAGAGCTCAAAAGGAGAAAGAGGATTTGGGCCATGCAATGTCACTTTCTTCGTCTGAAGATTCGAAGAGACCGAATGCTCATCAAGGATATAGGTGGGGGGAAGGAAATGGTGAAGATTATGGAAAGGCACTTCATGATAACTATAACTCATCTGCACACCCTCCTTATGCTCCGGCGCCATTTTATCCCAATGAATATAGAAGAATATGTGGCGGCTGCAGTCAGGAGATAATCTATGGAAATTGTTTAGGTTGCATGGATACTTATTTTCATCCAGACTGCTTTAAATGCCACTCGTGTCGCCATCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCGAAATGTGAAGTTTGCTTTCAATTTATTCCAATAAATGCTGCTGGTTTGATTGAGTATAGATGTCACCCCTTTTGGTCTCAAAAGTATTGTCCATGCCATGAATATGATAATACAGCTCGTTGCTGTAGTTGTGAAAGATTGGAGCCACGGAATACGAAATACTATGGACTCGAAGACGGGCGAAACTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTTTATATCATTCAATCAGAGATTATTATGAAGGAATGCATATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTTGAGAGAGAAGCACTTAATGAGGCTATAGTTGGAGAGAAAAATGGATTTCATCATTTGCCCGAAACAAGAGGTTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTATACATAGAAGGCCGAGAATCGGAGGTCATCGATTTATAGGGATGAGAACTCAACATCAAAAACTGATAAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTACCAAGGTTACTAACAGGTGCTATACTTGCTCATGAGTTGATGCATGCATGGTTACGTCTTAAAGGTTACCGCAATCTCAATCCTGAAGTAGAGGAAGGAATTTGTCAGGTTCTTTCATATATGTGGCTCGAGACAGAAGTTATGCCAACAAACTATCAAAACATGCCATCAACATCCACAGCTTCTTCTTCCTCCTCTTCATCCTCAAAGAAAGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTCTTCAAGAATCAAATTGTCAATGATTCTTCCCCAGCATATGGTGGTGGGTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTCTACGTAGTACTCTTGAGCATATTCGTTTGACTGGTTTTTTCCCTGTGTAA 1521 0.407 MAPSSDINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGPNNRGRSGRHLHDSSEESMSWRAPSRALDDRGRAQKEKEDLGHAMSLSSSEDSKRPNAHQGYRWGEGNGEDYGKALHDNYNSSAHPPYAPAPFYPNEYRRICGGCSQEIIYGNCLGCMDTYFHPDCFKCHSCRHPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPCHEYDNTARCCSCERLEPRNTKYYGLEDGRNLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQVPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRFIGMRTQHQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLETEVMPTNYQNMPSTSTASSSSSSSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGFFPV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02019 506 MobiDBLite consensus disorder prediction 431 450 - -
Vivi7g02019 506 SMART lim_4 142 194 IPR001781 -
Vivi7g02019 506 MobiDBLite consensus disorder prediction 47 86 - -
Vivi7g02019 506 Gene3D Cysteine Rich Protein 130 201 - -
Vivi7g02019 506 ProSiteProfiles LIM domain profile. 141 201 IPR001781 -
Vivi7g02019 506 Pfam Protein DA1 292 501 IPR022087 -
Vivi7g02019 506 Pfam LIM domain 143 196 IPR001781 -
Vivi7g02019 506 ProSitePatterns LIM zinc-binding domain signature. 143 177 IPR001781 -
Vivi7g02019 506 PANTHER PROTEIN DA1-RELATED 2 33 505 IPR045218 -
Vivi7g02019 506 MobiDBLite consensus disorder prediction 431 451 - -
Vivi7g02019 506 MobiDBLite consensus disorder prediction 41 107 - -
Vivi7g02019 506 CDD LIM_DA1 143 195 - -
Vivi7g02019 506 FunFam Protein DA1-related 2 131 196 - -
Vivi7g02019 506 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02019 Vivi-Chr7 81295059 81298870 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g02019 DA1-like 4.9e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02019 - - gmx:100784976 930.243