Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02003 ATGGAATGCAATGATGAGGTGGTGAAGATGATAGTTCCATCATCCCAGCCACAAACTCAACACACCATTGTTGAAGTGTCCGGCGACGGAGAGAAACAATACTGTTTTCCGGAAGAGATAGAGACTTTCTATGTCAAACTCACCGACTTGTTAAACTCCTCTGGACTCACTCTCATTTTAAATGTCCGAGAAACATCCTTCAACTTGTTCAAGTTTTACTTGGAGGTTGTTAGAAGAGGAGGTTATAAACAGGTTGGTAAACAAAAGCAATGGGGTGAAGTTGTTTCAGCTCTAAAACTGGAAGGAAGCAATGCAAAGTTACCATCTCAAATTAAAAAGCTCTATGCAAATCTTCTATACAAATTTGAGAAAATTTACTTCTACCGGTTTCGAGCAACTCAAACTACAACTGACACCACTATAGCATTACATGAAGGGCTTCTACAAGCACCCTCCAATGACAAAGAAAAGAAGAAGTCGCGAGGTGTTCCAAGGGGAGCTAATGGATATCAAATATTCCTCAAGCACGAATGTGCCCGATTAAAAGCTTGTCGTCAGGACATATATGGCAAAGCAATCCTGCACGCGGCTGTCAAAGGATGGAATAATTTGTCAGTCATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGCTAAAGGAAGCAATGATCATTGACAATAATAAACATAAGACCACTAAAGATCTTAAGGGGAAAGAAAAGATGCCTAGTATTTATGGTGATTACTACTGTGTAACTCCGCAGCCTCGAGCAAATTACTCTTATGGTAACAATGCAGCAGTGGACATGGCTTTTAAGATTACAGAAAAAACATCAATGGATCCCTGCTTCTTCCTATGTGATTTGGATGCTTATCGTTGGGTAGATTTACCAACAGTGATACCAACTGAAGAATCCAAATGA 924 0.3994 MECNDEVVKMIVPSSQPQTQHTIVEVSGDGEKQYCFPEEIETFYVKLTDLLNSSGLTLILNVRETSFNLFKFYLEVVRRGGYKQVGKQKQWGEVVSALKLEGSNAKLPSQIKKLYANLLYKFEKIYFYRFRATQTTTDTTIALHEGLLQAPSNDKEKKKSRGVPRGANGYQIFLKHECARLKACRQDIYGKAILHAAVKGWNNLSVIDKQPYVEESKKLKEAMIIDNNKHKTTKDLKGKEKMPSIYGDYYCVTPQPRANYSYGNNAAVDMAFKITEKTSMDPCFFLCDLDAYRWVDLPTVIPTEESK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02003 307 Pfam HMG (high mobility group) box 164 223 IPR009071 -
Vivi7g02003 307 SMART bright_3 38 128 IPR001606 GO:0003677
Vivi7g02003 307 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 41 135 - -
Vivi7g02003 307 SUPERFAMILY HMG-box 153 226 IPR036910 -
Vivi7g02003 307 SUPERFAMILY ARID-like 34 128 IPR036431 GO:0003677
Vivi7g02003 307 Gene3D - 27 141 IPR036431 GO:0003677
Vivi7g02003 307 Gene3D High mobility group box domain 149 244 IPR036910 -
Vivi7g02003 307 Pfam ARID/BRIGHT DNA binding domain 41 123 IPR001606 GO:0003677
Vivi7g02003 307 CDD ARID 41 123 - -
Vivi7g02003 307 ProSiteProfiles ARID domain profile. 30 127 IPR001606 GO:0003677
Vivi7g02003 307 SMART ARID_2 34 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02003 Vivi-Chr7 80915679 80917474 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02003 67 132 ARID Transcription Factor Family AT1G76110 31.818 1.11e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi7g02003 ARID 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02003 - - vvo:131617597 617.076