Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g02001 ATGGAATGCAATGATGAGGTGGTGAAGATGATAGTTCCATCATCACAACTCAACAATGTTGATGTTTCCGGCAACGGCGACAAGGAGTACTCTTTTCCGGAAGAGATAGAGACTTTCTACGTCAAACTCACCGACTTGTTAAACTCTTCTGGACTCACTCTCATTTTAAATGTCCGAGAAACATCCTTAGACTTGTTCAAGTTTTACTTGGAGGTTGTTAGAAGAGGAGGTTATAAACAGGTTGGTAAACAAAAGCAATGGGGTGAAGTTGTTTCAGCTTTAAAACTGGAAGGAAACAATGCAATGTTACTATCTCAAATTAAAAAGCTCTATGCAAATCTTCTATACAAATTTGAGAAAATTTACTTCTACCGGTTTCGAGCAACTCAAACTACAACTGACACCACTATAGCATTACATGAAGGGCTTCTACAAGCATCGTCGAATGACAAAGAAAAGAAGAAGTCGCGAGGTGTTCCAAGGGGAGCTAATGGATATCAAATATTCCTCAAGCACGAATGTGCCCGATTAAAAGCTTGTCGTCAGGACATATATGGCAAAGCAATCCTGCACGCGGCTGTCAAAGGATGGAATAATTTGTCAGTCATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGCTAAAGGAAGCAATGATTGTTAATGATAATAAACATAAGATCACTCAAGATCTTAAAGGGAAAGAAAAGATGCCTAGTATTTGTGGTGATTACACTTGTGTAACTTCACAACCTCAAGAAAGTTACTCTTATGGTAATGATGCAGCATTGGACTTGGCTTTTAAGATTACAGAAAAGACATCCATGGATCCCTTCTTTCTATGTGATTTGGATGCTTATCGTTCGGGTGATTTGCTAACTGTAATACCCACTGGAGAATCCAAATGA 909 0.3883 MECNDEVVKMIVPSSQLNNVDVSGNGDKEYSFPEEIETFYVKLTDLLNSSGLTLILNVRETSLDLFKFYLEVVRRGGYKQVGKQKQWGEVVSALKLEGNNAMLLSQIKKLYANLLYKFEKIYFYRFRATQTTTDTTIALHEGLLQASSNDKEKKKSRGVPRGANGYQIFLKHECARLKACRQDIYGKAILHAAVKGWNNLSVIDKQPYVEESKKLKEAMIVNDNKHKITQDLKGKEKMPSICGDYTCVTSQPQESYSYGNDAALDLAFKITEKTSMDPFFLCDLDAYRSGDLLTVIPTGESK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g02001 302 SUPERFAMILY ARID-like 30 123 IPR036431 GO:0003677
Vivi7g02001 302 Pfam HMG-box domain 161 219 IPR009071 -
Vivi7g02001 302 SUPERFAMILY HMG-box 149 218 IPR036910 -
Vivi7g02001 302 SMART bright_3 34 124 IPR001606 GO:0003677
Vivi7g02001 302 Gene3D - 25 137 IPR036431 GO:0003677
Vivi7g02001 302 Gene3D High mobility group box domain 144 239 IPR036910 -
Vivi7g02001 302 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 37 131 - -
Vivi7g02001 302 Pfam ARID/BRIGHT DNA binding domain 37 119 IPR001606 GO:0003677
Vivi7g02001 302 ProSiteProfiles ARID domain profile. 26 123 IPR001606 GO:0003677
Vivi7g02001 302 SMART ARID_2 30 119 - -
Vivi7g02001 302 CDD ARID 37 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g02001 Vivi-Chr7 80777541 80785222 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g02001 63 128 ARID Transcription Factor Family AT1G76110 34.848 1.95e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi7g02001 ARID 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g02001 - - vvo:131617597 520.776