Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01966 ATGGAGGGATTTCACTCTGATCATCAGTACTGGTTTTGGACGAAGAGAAGGCAAATACAAGCCCAAACTGAATCATGGGAAGAAAAAGCATTTGCAGAAGATGCAGCTAGGAGTATACTGAATGGAAGCATATGGCCACCAAGATTCTATTCATGCAACTTCTGCAAAAGAGAGTTTAGGTCTGCACAAGCTCTTGGTGGTCACATGAATATTCATAGGAGAGATAGAGCTAGACTCAAACAAAATCTTAGCCCTCAAAGCAACAATGATTTCATCAACTCATCATCACTAGGTAATCATTGCTTTCCTGCAAAAAGACGATCCGTTTCGCCTTCTAGAATGATCTCAACCATCTCATCATCACCTTATTCTTCTTCAATTATTTGGGGACAGAAGAAGATAGCTTCTAATATTACAAGAGAAAACAATTTCAAGGATTGTGTTGAAACAAGTCTGTCTTTAGGAATGTTTGGACAAAAATCATCAACTGTTGTTCTTCCATGTGAGGAAAAAGGTATCATTAGTAAAAGATTGAAGACTAATAACACTTCTTCTGTTTTCATCAAACCTTGTTCAAATGATCATCAAAGGTTCTTGAGTTTTCAACAACCTTCAGAAATTGTTCTTGGAGTTAACCATGGAATGGAAGATTTAGATCTTGAACTTAGGCTAGGGAAACAACAAAAAATTATTAAGTAG 699 0.3662 MEGFHSDHQYWFWTKRRQIQAQTESWEEKAFAEDAARSILNGSIWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPQSNNDFINSSSLGNHCFPAKRRSVSPSRMISTISSSPYSSSIIWGQKKIASNITRENNFKDCVETSLSLGMFGQKSSTVVLPCEEKGIISKRLKTNNTSSVFIKPCSNDHQRFLSFQQPSEIVLGVNHGMEDLDLELRLGKQQKIIK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01966 232 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Vivi7g01966 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Vivi7g01966 232 PANTHER OS07G0101800 PROTEIN 20 227 - -
Vivi7g01966 232 Gene3D Classic Zinc Finger 46 99 - -
Vivi7g01966 232 SMART c2h2final6 50 72 IPR013087 -
Vivi7g01966 232 Pfam C2H2-type zinc finger 50 74 - -
Vivi7g01966 232 SUPERFAMILY beta-beta-alpha zinc fingers 47 76 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01966 Vivi-Chr7 79996371 79997218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01966 11 225 C2H2 Transcription Factor Family AT4G17810 33.333 1.60e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi7g01966 zf-C2H2_6 2.4e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01966 7 79996371 79997218 Vivi7g01966 7 79996371 79997218 ECH