Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01958 ATGACAGGATTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCTAGTGATTGTGTTTTTGCTCCTTACTTCTCTTATGAACAAGCTTCAACCCATTTTTCAGCTGTGCATAAGGTTTATGGTGCTAGTAATGTCTCTAAACTATTGTCACATCTTCCTATTCAGAATAGAAGTGATGCTGCCATTACTATATCTTATGAAGCCTTGGCTCGCATGCAAGATCCTATTTATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTTGCAAGTTTACAAGAGGAGATAGATATTCTTGGAAGTCTAATGGAAACTTCTAATGTTAGTATTATGGATTGTGGAAATGTCCAAGCACCAATGAACTCAAACAATGGAACACAATATTACCCTAATCAATTGGCTAATTATCTTTCACAAGAAGAAGGTTCCACAACATGTCAAAGTTTTGAATCATACATGAATATGGATATGCAAATTCCTAGTGCACATGGAATGGATGAGCCTTTATATGGTGATTCCAATTCCAATCCATTAGAGAAGTTTCTATCAGGAATTGATCAAGAGGGTTTCCTGAACCATCCTTGGTTCAAGCATAATGCAGACATGTAG 624 0.375 MTGFGSSCGACKFLRRKCASDCVFAPYFSYEQASTHFSAVHKVYGASNVSKLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDILGSLMETSNVSIMDCGNVQAPMNSNNGTQYYPNQLANYLSQEEGSTTCQSFESYMNMDMQIPSAHGMDEPLYGDSNSNPLEKFLSGIDQEGFLNHPWFKHNADM 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01958 207 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vivi7g01958 207 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vivi7g01958 207 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01958 Vivi-Chr7 79876460 79877543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01958 1 202 AS2 family AT5G06080 47.291 5.07e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi7g01958 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01958 K13945 - gmx:100809636 306.219