Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01951 ATGTCTTCACATTGGTGCCACAGGTGCAACAAATTTGTTAGGGTATGGAGGCTAGGGATGCCGATATGTTCCGATTGCGACAGTGGATTTGTCGAAGAGCTAGAACATCCAGCACATTCTCTTCATGCAGACGGTGCTCGTCCGAGGAGGCTACCTATGACAGCCGCCATGTACATGATGGGTCGTCATCATAGTAACAATTCAAATCAAAATCAAAATCAAAATCAAAATGCTCGTCGACGTTACTGCAGAAACAATAATCACGGCGGTGACATTTCTACGTTTAACCCAATCATTATGATACGAGGTGGTGGAACCTCCGAGGGAACAAGCCGCGAGGGCGAAGAAAATCGCGGGTACGAGCTTTTCTACGAAGACAGTCCCGGTTCTGGTCTCCGGCCATTGCCTCCAAGGATGTCAGAGACTCTTCTTGGGCCAGGATTTGAAAGGGTGATGGAACAACTCTCTCATGTTGAAGCTAATCCTAATGGGAGCGAGACGAATAGCCGAAAACCATTACCCGCGTCAAAATCAACGGTAGAATCGTTACCATCTATCGAAATAAATGATAATCACGTAGAGATCGAATCACAATGCGCTGTTTGCAAAGATCATTTCGATCTCGGAGTTATAGCCCGAGAAATGCCATGCAAACATATATACCATAACGAATGCATACTTCCATGGCTCGAGATTCGCAATTCTTGCCCTATTTGTCGCCATGAACTCCCATGTGAATCGCCACAGAATAACAACAATGAAGAAGAGAATGTTGGATTGACAATATGGAGGCTACCGGGCGGAGGATTCGCGGTCGGAAGATTCAACGGTGGAAGCCGAGAGAATACCGAGGGAGAGCTTCCTATTGTTTACACAGAATTGGATGGTGGATTTAATAGTGTTGGTGAACCAAGGAGGATTTCATGGTCAATGAGTACTACTAGTTCAAATGGAGGAGGGAGGGGAAGGAGTAATATAGGGGGTGGAATTAGGAGAATGTTGAACAATTTCCTTGGATGTTTGGGAGGTGGTGATGGAAGTAGTTATCAACAAGGTTCAATTTCTACTACAAGAGAAATATCTGAAACTATAACCACAAGGAACAATAATAATAATAATGCATCTCGTGCTAATGTGAATCCTTCTACAAGAGCTCGAAGAACTTGGTCTATGGATGTAAATGGTGGAATTAGACCATGGTAA 1203 0.4422 MSSHWCHRCNKFVRVWRLGMPICSDCDSGFVEELEHPAHSLHADGARPRRLPMTAAMYMMGRHHSNNSNQNQNQNQNARRRYCRNNNHGGDISTFNPIIMIRGGGTSEGTSREGEENRGYELFYEDSPGSGLRPLPPRMSETLLGPGFERVMEQLSHVEANPNGSETNSRKPLPASKSTVESLPSIEINDNHVEIESQCAVCKDHFDLGVIAREMPCKHIYHNECILPWLEIRNSCPICRHELPCESPQNNNNEEENVGLTIWRLPGGGFAVGRFNGGSRENTEGELPIVYTELDGGFNSVGEPRRISWSMSTTSSNGGGRGRSNIGGGIRRMLNNFLGCLGGGDGSSYQQGSISTTREISETITTRNNNNNNASRANVNPSTRARRTWSMDVNGGIRPW 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01951 400 SMART ring_2 199 239 IPR001841 -
Vivi7g01951 400 SUPERFAMILY RING/U-box 179 247 - -
Vivi7g01951 400 MobiDBLite consensus disorder prediction 159 181 - -
Vivi7g01951 400 MobiDBLite consensus disorder prediction 63 116 - -
Vivi7g01951 400 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Vivi7g01951 400 MobiDBLite consensus disorder prediction 63 93 - -
Vivi7g01951 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 246 IPR013083 -
Vivi7g01951 400 Pfam Ring finger domain 198 240 IPR001841 -
Vivi7g01951 400 Pfam Protein of unknown function (DUF1117) 258 369 IPR010543 -
Vivi7g01951 400 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Vivi7g01951 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 244 - -
Vivi7g01951 400 FunFam E3 ubiquitin-protein ligase RING1-like 161 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01951 Vivi-Chr7 79759579 79760897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01951 166 246 C3H Transcription Factor Family AT5G15820 47.561 5.30e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01951 K11982 - zju:107413417 379.022