Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01934 ATGACTAAGCTCAACATCATCGACATTGCCACCCTCTTATCTCTTCTTCTCACTTCAACCCAAGCCACACTCCTCGGAGGACCATGGCAAACCGCCCACGCCACCTTCTACGGCGGCAACGACGCCTCCGGAACAATGGGTGGCGCGTGTGGTTACGGGAACTTATACAGCCAAGGCTACGGCGTCAACACGGCGGCATTGAGCACCGCACTATTCAACAACGGCTTAAGCTGCGGCGCGTGTTTTGAAATAAAGTGCGCAAATGATCCTACCTGGTGCCACGCTGGCAGCCCTTCCATATTAGTAACTGCCACAAATTTCTGTCCACCAAATTATGCTTTACCAAGTGATAATGGTGGTTGGTGTAATCCTCCACGTGCACACTTCGATCTCGCCATGCCTATGTTCCTCAAAATCGCTCAGTATCGCGCCGGCATTGTCCCCGTATCTTACCGCCGGGTATCGTGTAGGAAGCAAGGAGGGATAAGATTCACGATCAACGGTTTTCGTTACTTTAATTTGGTTTTAATCACCAACGTTGCGGGTGCAGGGGATATCGTGAGTACTAGTGTGAAAGGTTCGAAAACAGGTTGGTTGAGTATGAGTCGTAACTGGGGGCAAAATTGGCAATCAAATGTTGTTTTGGTTGGTCAGACACTTTCCTTTAGGGTGACAGCAAGTGACAAACGCACTTCAACTTCTTGGAATATTGCTCCTTCTAATTGGCAGTTTGGTCAAACTTTCAGTGGCAAGAATTTTTAA 762 0.4843 MTKLNIIDIATLLSLLLTSTQATLLGGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPTWCHAGSPSILVTATNFCPPNYALPSDNGGWCNPPRAHFDLAMPMFLKIAQYRAGIVPVSYRRVSCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVSTSVKGSKTGWLSMSRNWGQNWQSNVVLVGQTLSFRVTASDKRTSTSWNIAPSNWQFGQTFSGKNF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01934 253 PANTHER EXPANSIN-A15 18 253 IPR002963 GO:0009664
Vivi7g01934 253 Pfam Lytic transglycolase 64 151 IPR009009 -
Vivi7g01934 253 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
Vivi7g01934 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vivi7g01934 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Vivi7g01934 253 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vivi7g01934 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vivi7g01934 253 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vivi7g01934 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vivi7g01934 253 FunFam Expansin 18 157 - -
Vivi7g01934 253 SMART dpbb_1 64 151 IPR007112 -
Vivi7g01934 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 161 IPR007112 -
Vivi7g01934 253 FunFam Expansin 161 253 - -
Vivi7g01934 253 Gene3D - 161 253 IPR036749 -
Vivi7g01934 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Vivi7g01934 253 Gene3D - 16 157 IPR036908 -
Vivi7g01934 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vivi7g01934 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Vivi7g01934 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Vivi7g01934 253 SUPERFAMILY Barwin-like endoglucanases 28 179 IPR036908 -
Vivi7g01934 253 CDD DPBB_EXPA_N 28 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01934 Vivi-Chr7 79388465 79389820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01934 1 253 Expansin Gene Family AT3G55500 80.237 7.93e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01934 - - gmx:100803242 469.159