Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01932 ATGGGTAAGAAAAACAAAACAAGGAACGAAAATGGCGACGGCACCTTAAAACAATCCCCCTTGACTCTGTTTGTTTCCAACTTACCTTACTCCTTTACAAACGCTCAGCTTGAGGAAACTTTCAGTGAAGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAAAAGGGGTCTACTCAACATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAAGCTGATGCTAACAGTGCCATTGAGCTGAAGAACGGTTCTTTGGTTGGTGGCCGGAAAATTGCAGTGAAGCACGCAATGCCCCGTCCTCCCCGTGAAAATAGAAGATTGAAACCAGATCAAGAGGGCAAGGAAGATGATCTCGCAGAGTCAAAAATTGATGACAAAGTCAGTGAATTACCTGTTGCAGAGAAGCCTGTTCCAGTTCCAAAGGAAGAAGAAGGAATAGTTTTGAATAAACAAAAAAACTCAAGGAAGCCCGTGGAAATAAAGAAAGCAGCTCTTTGTAATAATGTAGTAGATGAGGGGGGTGGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATGAATTCTGCCATGGCCGAAGATGTTCACCGTCAAGCCAAGGAAATTGGAACTGTGTGCTCTATTAAGTCTCTCTCAAGGAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGATGTACTTTGGATGCTTCAGCTGTACTATATACTAGTGTAAAATCAGCCCGTGATTCTGTTGCAAAATTGCATAGAAAAGAGATAGGAGGCGGAACTGTTTGGGCACGCCAACTTGGTGGCGAGGGATCCAAGACTCAAAAATGGAAGCTTATTATTAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATCAGTGATGCTTTTTCATCTGCGGGGCCTGTATGGGAGGTGTTCATTCCACAGAAATCCGACACAGGTCTTTCAAAGGGTTTCGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTCGAAAGCTCAATGGATTTAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCCGAGGAAGAACAAAAGTTGACAGATGAAGATGGTAGTATTACTACAGATGATGATGTTGAGGGTTCCGACACAAAATCTGATCAAGGAGATGATAGTGATAATGATGGCGCAGTGGAGGAGGATGTTCCGTCTGAAGATGATTTTGACAAGGAAGCAGACACTGCAAGAAAGATTCTTAACAATTTGATTACATCCTCCTCTGTCAGAGATGCATCTGTAAATACGGATTCTGTGTGTTCCGAAGAAAATAAGGAGCCAAAACCTGAGGAAACTGTTAAGGATGCGGATAGTAAAGCATCTAAAGAGGCTGACAAAGTTTCTGCCACTTCTAAGCCTGAGACTTCAAGCAGGTTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACAATTTTTATAAATAATCTTCCCTTTGAATGTGATACTGAAGAAGTGAAGCAACGATTTTCTGCATTTGGAGTAGTAGAATATTTTGCTCCTGTTCTCCACCCATTGACCAAGCGTCCACGAGGGACTGGTTTTCTCAAATTTAAAACTGTCGAAGCAGCTGATGCTGCAATTTCAGCTGCCAATGCTGCTTCTGGGGTGGGTATTTTAGTGAAGGGTAGACAATTAAAAGTTTTGAAAGCTCTGGACAAGAAAACAGCTCATGACAAGGAACAGGAGAAAGAAAAAAACGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGGACTCCAGCTGCGGAAGGAGTTTCAGCCAGTGATATGGCAAAACGAAAAGATTTGGAAAGGAAAAAGAAGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCCAAGTCAAAGACTGAAAAACAAATAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGACAGATAAAGCTTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAGTATTCCCGCGGAGTCGCCTTTCTTGAATTTTCAGAACACCAGCACGCCCTTGTTGCATTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAGACATTGAAACTTCGGAAGGAAAAACTACAATATCAGCAGCAGGCTCCTTATGATGACAACAACAGAGACGAAAATGATAAACCCGACAATGCTGGAGGAGGTTTCACACATGGAAAGGACAGAAAACGAAAATCTCAAGACCATGAGAAACCCGCAAATGAGAGTGAACAAGACGGTAAGGTTGCAAGTGGAAAATCTCCTCAAGGAGGCAAATTCAAAAAACAGAAAGACAACCCCAAGAGTACAAATACCAAAGTGTTATCATCCAAAGAAAGTTCAAAAGATTCTTCGGCCAGGAAGTTAGCGAATAACCAGGATGGCCGGAATCACAGTAAAAACACTGCCATTGACAGTAGAATTGGAAAACAATCAGGAAAGAAAGATGATGGGGTATATGGAAAGAGGAAGATGCAAAACCAAGAACAGGCAGGGGAACAGGTTCCTGGGAAAAGGGCAAGGAAGAATAAAGATCCAGTAGGGAAGGACACAGTAGATAAGCTTGACAAGCTTATTGAACAATATAGATCCAAGTTCTCAAACAAGGGCTCCCAAGGAAATGATGGTGAGAGAAAACAATCTAAACAGCTTAGAAAATGGTTCCAAACATAA 2862 0.4161 MGKKNKTRNENGDGTLKQSPLTLFVSNLPYSFTNAQLEETFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEADANSAIELKNGSLVGGRKIAVKHAMPRPPRENRRLKPDQEGKEDDLAESKIDDKVSELPVAEKPVPVPKEEEGIVLNKQKNSRKPVEIKKAALCNNVVDEGGGSEKQRVARTVIFGGLMNSAMAEDVHRQAKEIGTVCSIKSLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARDSVAKLHRKEIGGGTVWARQLGGEGSKTQKWKLIIRNLPFKAKENEISDAFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGFKFGSRLIAVDWAVPKKIFSSDTNDAPASEEEQKLTDEDGSITTDDDVEGSDTKSDQGDDSDNDGAVEEDVPSEDDFDKEADTARKILNNLITSSSVRDASVNTDSVCSEENKEPKPEETVKDADSKASKEADKVSATSKPETSSRLSNPKETEDDLQRTIFINNLPFECDTEEVKQRFSAFGVVEYFAPVLHPLTKRPRGTGFLKFKTVEAADAAISAANAASGVGILVKGRQLKVLKALDKKTAHDKEQEKEKNEVHDHRNLYLAKEGLILEGTPAAEGVSASDMAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSKTEKQIKKLCIDAVISRATKQKPVIRQIKLLKDGRKGKATQEQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKEKLQYQQQAPYDDNNRDENDKPDNAGGGFTHGKDRKRKSQDHEKPANESEQDGKVASGKSPQGGKFKKQKDNPKSTNTKVLSSKESSKDSSARKLANNQDGRNHSKNTAIDSRIGKQSGKKDDGVYGKRKMQNQEQAGEQVPGKRARKNKDPVGKDTVDKLDKLIEQYRSKFSNKGSQGNDGERKQSKQLRKWFQT 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01932 953 FunFam RNA-binding motif protein 28 651 746 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 94 128 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 763 953 - -
Vivi7g01932 953 CDD RRM2_RBM28_like 279 355 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 368 402 - -
Vivi7g01932 953 SUPERFAMILY RNA-binding domain, RBD 274 358 IPR035979 GO:0003676
Vivi7g01932 953 Gene3D - 651 746 IPR012677 -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 403 418 - -
Vivi7g01932 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Vivi7g01932 953 MobiDBLite consensus disorder prediction 440 495 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 898 926 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 770 807 - -
Vivi7g01932 953 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 835 - -
Vivi7g01932 953 CDD RRM4_RBM28_like 652 749 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 97 128 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 450 478 - -
Vivi7g01932 953 SUPERFAMILY RNA-binding domain, RBD 20 264 IPR035979 GO:0003676
Vivi7g01932 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 356 IPR000504 GO:0003723
Vivi7g01932 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 583 IPR000504 GO:0003723
Vivi7g01932 953 SMART rrm1_1 279 352 IPR000504 GO:0003723
Vivi7g01932 953 SMART rrm1_1 22 95 IPR000504 GO:0003723
Vivi7g01932 953 SMART rrm1_1 501 579 IPR000504 GO:0003723
Vivi7g01932 953 SMART rrm1_1 653 744 IPR000504 GO:0003723
Vivi7g01932 953 CDD RRM1_RBM28_like 22 100 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 361 420 - -
Vivi7g01932 953 Gene3D - 265 402 IPR012677 -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 872 886 - -
Vivi7g01932 953 MobiDBLite consensus disorder prediction 849 871 - -
Vivi7g01932 953 Gene3D - 434 598 IPR012677 -
Vivi7g01932 953 Gene3D - 2 110 IPR012677 -
Vivi7g01932 953 Coils Coil 743 763 - -
Vivi7g01932 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Vivi7g01932 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 562 IPR000504 GO:0003723
Vivi7g01932 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Vivi7g01932 953 SUPERFAMILY RNA-binding domain, RBD 500 730 IPR035979 GO:0003676
Vivi7g01932 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 765 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01932 Vivi-Chr7 79359846 79368411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01932 282 357 Eukaryotic Initiation Factors Gene Family AT3G11400 35.526 2.22e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01932 K14573 - gmx:100794821 1265.75