Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01931 ATGGGTAAGAAAAACAAAACAAGGAACGAAAATGGCGACGGCACCTTAAAACAATCCCCCTTGACTCTGTTTGTTTCCAACTTACCTTACTCCTTTACAAACGCTCAGCTTGAGGAAACTTTCAGTGAAGTTGGACCTGTTAGGCGTTGCTTCATGGTCACACAAAAGGGGTCTACTCAACATCGTGGTTTTGGTTATGTCCAATTTGCTGTTGAAGCTGATGCTAACAGTGCCATTGAGCTGAAGAACGGTTCTTTGGTTGGTGGCCGGAAAATTGCAGTGAAGCACGCAATGCCCCGTCCTCCCCGTGAAAATAGAAGATTGAAACCAGATCAAGAGGGCAAGGAAGATGATCTCGCAGAGTCAAAAATTGATGACAAAGTCAGTGAATTACCTGTTGCAGAGAAGCCTGTTCCAGTTCCAAAGGAAGAAGGAATAGTTTTGAATAAACAAAAAAACTCAAGGAAGCCCGTGGAAATAAAGAAAGCAGCTCTTTGTAATAATGTAGTAGATGAGGGGGGTGGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATGAATTCTGCCATGGCCGAAGATGTTCACCGTCAAGCCAAGGAAATTGGAACTGTGTGCTCTATTAAGTCTCTCTCAAGGAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGATGTACTTTGGATGCTTCAGCTGTACTATATACTAGTGTAAAATCAGCCCGTGATTCTGTTGCAAAATTGCATAGAAAAGAGATAGGAGGCGGAACTGTTTGGGCACGCCAACTTGGTGGCGAGGGATCCAAGACTCAAAAATGGAAGCTTATTATTAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATCAGTGATGCTTTTTCATCTGCGGGGCCTGTATGGGAGGTGTTCATTCCACAGAAATCCGACACAGGTCTTTCAAAGGGTTTCGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTCGAAAGCTCAATGGATTTAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCCGAGGAAGAACAAAAGTTGACAGATGAAGATGGTAGTATTACTACAGATGATGATGTTGAGGGTTCCGACACAAAATCTGATCAAGGAGATGATAGTGATAATGATGGCGCAGTGGAGGAGGATGTTCCGTCTGAAGATGATTTTGACAAGGAAGCAGACACTGCAAGAAAGATTCTTAACAATTTGATTACATCCTCCTCTGTCAGAGATGCATCTGTAAATACGGATTCTGTGTGTTCCGAAGAAAATAAGGAGCCAAAACCTGAGGAAACTGTTAAGGATGCGGATAGTAAAGCATCTAAAGAGGCTGACAAAGTTTCTGCCACTTCTAAGCCTGAGACTTCAAGCAGGTTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACAATTTTTATAAATAATCTTCCCTTTGAATGTGATACTGAAGAAGTGAAGCAACGATTTTCTGCATTTGGAGTAGTAGAATATTTTGCTCCTGTTCTCCACCCATTGACCAAGCGTCCACGAGGGACTGGTTTTCTCAAATTTAAAACTGTCGAAGCAGCTGATGCTGCAATTTCAGCTGCCAATGCTGCTTCTGGGGTGGGTATTTTAGTGAAGGGTAGACAATTAAAAGTTTTGAAAGCTCTGGACAAGAAAACAGCTCATGACAAGGAACAGGAGAAAGAAAAAAACGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGGACTCCAGCTGCGGAAGGAGTTTCAGCCAGTGATATGGCAAAACGAAAAGATTTGGAAAGGAAAAAGAAGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCCAAGTCAAAGACTGAAAAACAAATAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGACAGATAAAGCTTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAGTATTCCCGCGGAGTCGCCTTTCTTGAATTTTCAGAACACCAGCACGCCCTTGTTGCATTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAGACATTGAAACTTCGGAAGGAAAAACTACAATATCAGCAGCAGGCTCCTTATGATGACAACAACAGAGACGAAAATGATAAACCCGACAATGCTGGAGGAGGTTTCACACATGGAAAGGACAGAAAACGAAAATCTCAAGACCATGAGAAACCCGCAAATGAGAGTGAACAAGACGGTAAGGTTGCAAGTGGAAAATCTCCTCAAGGAGGCAAATTCAAAAAACAGAAAGACAACCCCAAGAGTACAAATACCAAAGTGTTATCATCCAAAGAAAGTTCAAAAGATTCTTCGGCCAGGAAGTTAGCGAATAACCAGGATGGCCGGAATCACAGTAAAAACACTGCCATTGACAGTAGAATTGGAAAACAATCAGGAAAGAAAGATGATGGGGTATATGGAAAGAGGAAGATGCAAAACCAAGAACAGGCAGGGGAACAGGTTCCTGGGAAAAGGGCAAGGAAGAATAAAGATCCAGTAGGGAAGGACACAGTAGATAAGCTTGACAAGCTTATTGAACAATATAGATCCAAGTTCTCAAACAAGGGCTCCCAAGGAAATGATGGTGAGAGAAAACAATCTAAACAGCTTAGAAAATGGTTCCAAACATAA 2859 0.4162 MGKKNKTRNENGDGTLKQSPLTLFVSNLPYSFTNAQLEETFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEADANSAIELKNGSLVGGRKIAVKHAMPRPPRENRRLKPDQEGKEDDLAESKIDDKVSELPVAEKPVPVPKEEGIVLNKQKNSRKPVEIKKAALCNNVVDEGGGSEKQRVARTVIFGGLMNSAMAEDVHRQAKEIGTVCSIKSLSRNDLQQHGLLQDGCTLDASAVLYTSVKSARDSVAKLHRKEIGGGTVWARQLGGEGSKTQKWKLIIRNLPFKAKENEISDAFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGFKFGSRLIAVDWAVPKKIFSSDTNDAPASEEEQKLTDEDGSITTDDDVEGSDTKSDQGDDSDNDGAVEEDVPSEDDFDKEADTARKILNNLITSSSVRDASVNTDSVCSEENKEPKPEETVKDADSKASKEADKVSATSKPETSSRLSNPKETEDDLQRTIFINNLPFECDTEEVKQRFSAFGVVEYFAPVLHPLTKRPRGTGFLKFKTVEAADAAISAANAASGVGILVKGRQLKVLKALDKKTAHDKEQEKEKNEVHDHRNLYLAKEGLILEGTPAAEGVSASDMAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSKTEKQIKKLCIDAVISRATKQKPVIRQIKLLKDGRKGKATQEQYSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKEKLQYQQQAPYDDNNRDENDKPDNAGGGFTHGKDRKRKSQDHEKPANESEQDGKVASGKSPQGGKFKKQKDNPKSTNTKVLSSKESSKDSSARKLANNQDGRNHSKNTAIDSRIGKQSGKKDDGVYGKRKMQNQEQAGEQVPGKRARKNKDPVGKDTVDKLDKLIEQYRSKFSNKGSQGNDGERKQSKQLRKWFQT 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01931 952 MobiDBLite consensus disorder prediction 360 419 - -
Vivi7g01931 952 CDD RRM4_RBM28_like 651 748 - -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 402 417 - -
Vivi7g01931 952 Gene3D - 264 401 IPR012677 -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 439 494 - -
Vivi7g01931 952 SUPERFAMILY RNA-binding domain, RBD 273 357 IPR035979 GO:0003676
Vivi7g01931 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Vivi7g01931 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Vivi7g01931 952 SUPERFAMILY RNA-binding domain, RBD 20 263 IPR035979 GO:0003676
Vivi7g01931 952 MobiDBLite consensus disorder prediction 94 127 - -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 871 885 - -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 848 870 - -
Vivi7g01931 952 Coils Coil 742 762 - -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 449 477 - -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 762 952 - -
Vivi7g01931 952 CDD RRM2_RBM28_like 278 354 - -
Vivi7g01931 952 MobiDBLite consensus disorder prediction 897 925 - -
Vivi7g01931 952 CDD RRM1_RBM28_like 22 100 - -
Vivi7g01931 952 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 951 - -
Vivi7g01931 952 Gene3D - 650 745 IPR012677 -
Vivi7g01931 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 651 764 IPR000504 GO:0003723
Vivi7g01931 952 MobiDBLite consensus disorder prediction 769 806 - -
Vivi7g01931 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 561 IPR000504 GO:0003723
Vivi7g01931 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Vivi7g01931 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 348 IPR000504 GO:0003723
Vivi7g01931 952 MobiDBLite consensus disorder prediction 97 127 - -
Vivi7g01931 952 SUPERFAMILY RNA-binding domain, RBD 499 729 IPR035979 GO:0003676
Vivi7g01931 952 Gene3D - 2 113 IPR012677 -
Vivi7g01931 952 Gene3D - 433 596 IPR012677 -
Vivi7g01931 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 582 IPR000504 GO:0003723
Vivi7g01931 952 MobiDBLite consensus disorder prediction 367 401 - -
Vivi7g01931 952 SMART rrm1_1 278 351 IPR000504 GO:0003723
Vivi7g01931 952 SMART rrm1_1 652 743 IPR000504 GO:0003723
Vivi7g01931 952 SMART rrm1_1 22 95 IPR000504 GO:0003723
Vivi7g01931 952 SMART rrm1_1 500 578 IPR000504 GO:0003723
Vivi7g01931 952 FunFam RNA-binding motif protein 28 650 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01931 Vivi-Chr7 79359845 79368411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01931 281 356 Eukaryotic Initiation Factors Gene Family AT3G11400 35.526 2.20e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01931 K14573 - gmx:100794821 1269.6