Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01923 ATGGAGGATATTTTCAAAGATTGTGGTGAAGTTGTAGATGTCCAATTCATAACAGATTCTGAAGGGAGGTTTAGAGGCTTTGGATTTGTCAAATTTGGAACAGTAGAAGCAGCAGACAAAGCCCTCAAATTGCATAATACCGAATTATTGAATCGTCGTATCAAAGTAGACAAAGCTCGGGAAAAGAGTGAATATCCCACCTATAGAAGTTCATTTCATACGGGTGGAAATCTTCACTCTCACACTATAACGGGTTTTGACGCATCTCTTGGAGAAAACAAGCCCAAAATCCCTGCTACACCAAATCATACAAATATTACATCAAATACTATATATGTCGGAAACTTGTCATACACCGGAAAAACTTTTTAA 372 0.3737 MEDIFKDCGEVVDVQFITDSEGRFRGFGFVKFGTVEAADKALKLHNTELLNRRIKVDKAREKSEYPTYRSSFHTGGNLHSHTITGFDASLGENKPKIPATPNHTNITSNTIYVGNLSYTGKTF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01923 123 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 2 106 - -
Vivi7g01923 123 Gene3D - 1 92 IPR012677 -
Vivi7g01923 123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
Vivi7g01923 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 55 IPR000504 GO:0003723
Vivi7g01923 123 SUPERFAMILY RNA-binding domain, RBD 2 119 IPR035979 GO:0003676
Vivi7g01923 123 SMART rrm1_1 1 57 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01923 Vivi-Chr7 79100779 79102565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01923 1 53 Eukaryotic Initiation Factors Gene Family AT2G23350 35.849 2.00e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01923 - - vvo:131619440 244.973