Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01921 ATGGAGGATATTTTCAAAGATTGTGGTGAAGTTGTAGATGTCCAATTCATAACAGATTGTGAAGGGAGGTTTAGAGGCTTTGGATTTGTCAAATTTGGAACAGTAGAAGCAGTAGACAAAGCCCTCAAATTGCATAATACCGAATTATTGAATCGTCGTATCAAAGTAGACAAAGCTCGGGAAAAGAGTGAATATCCCACCTATAGAAGTTCATTTCATACGGGTGGAAATCTTCACTCTCACACTATAAAGGGTTTTGACGCATCTCTCGTAGAAAGCAAGCCCAAAATCCCTGCCACACCAAATCATACAAATGTTACATCAAATATTGTATATGTTGGAAACTTGTCATACACTGTAGAACGAGCTGATATGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTTCGTCTCCGTACAAACTGCAAAGGGAAGTTTAATGGCCATGGACATGTTCAGTTTTCAACAGCAGAAGCAGCACAAAAGGCTCTTGTGATGAATAAGAAAGTATTTTGTAATCGTCCCATGGTTGTCGATTTAGCTTTGGAAAGGCAAAAATATTCCCCCAATGAAAGCTGGAGCATCCAATTTCAGAAATGCGGAAGTTTTCAGCCTCTAACTGTACTTGTAATTGGATTTAATACATCCCTTACCGAAGAGAAGATAATAGCTAGCCTGCACAATCATTTCAACTTTTGTGGAGAGATTACAAGGATCTCCTTACCAAGATATCATGATTCTGGGGCTATTAAGGGGTATGCTCATTTGGATTTCAAGGATATTCATGGTTATAAGAAGGCACTAAAACTTCATCAAACAACGATAGGAGGTTATTGGGTGTCTGTTGAAACAGCAAAGCCATAG 870 0.3839 MEDIFKDCGEVVDVQFITDCEGRFRGFGFVKFGTVEAVDKALKLHNTELLNRRIKVDKAREKSEYPTYRSSFHTGGNLHSHTIKGFDASLVESKPKIPATPNHTNVTSNIVYVGNLSYTVERADMEKLFKDYGEIVDVRLRTNCKGKFNGHGHVQFSTAEAAQKALVMNKKVFCNRPMVVDLALERQKYSPNESWSIQFQKCGSFQPLTVLVIGFNTSLTEEKIIASLHNHFNFCGEITRISLPRYHDSGAIKGYAHLDFKDIHGYKKALKLHQTTIGGYWVSVETAKP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01921 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 55 IPR000504 GO:0003723
Vivi7g01921 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Vivi7g01921 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 280 IPR000504 GO:0003723
Vivi7g01921 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 289 IPR000504 GO:0003723
Vivi7g01921 289 SMART rrm1_1 1 57 IPR000504 GO:0003723
Vivi7g01921 289 SMART rrm1_1 209 285 IPR000504 GO:0003723
Vivi7g01921 289 SMART rrm1_1 110 181 IPR000504 GO:0003723
Vivi7g01921 289 SUPERFAMILY RNA-binding domain, RBD 101 201 IPR035979 GO:0003676
Vivi7g01921 289 SUPERFAMILY RNA-binding domain, RBD 205 289 IPR035979 GO:0003676
Vivi7g01921 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
Vivi7g01921 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 2 76 - -
Vivi7g01921 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 185 IPR000504 GO:0003723
Vivi7g01921 289 SUPERFAMILY RNA-binding domain, RBD 2 77 IPR035979 GO:0003676
Vivi7g01921 289 Gene3D - 192 289 IPR012677 -
Vivi7g01921 289 Gene3D - 1 70 IPR012677 -
Vivi7g01921 289 Gene3D - 83 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01921 Vivi-Chr7 79072545 79079597 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01921 3 288 Eukaryotic Initiation Factors Gene Family AT1G34140 25.597 4.00e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01921 - - vvo:131620937 585.104