Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01917 ATGGACAATGAATCTGAACCTCTCTGTGAAGATGCAATTCCGCCACAGAAAATTGGCAACAAGAGGGAGTATGAAGACGAAGATCAGAAGGAAGTTATTACAAAGAAGAAGAAGAGAATCCTTGAGGATAAGGATGAAAGTAATTCAGATTTTTCTGAACATGATGAGAAACTTAAAGCTGAAATCGAATCTGATAACAGTTGCGGATCTTTGGAATCATTTGATGATGGTGTCTCAGATCCTAACTCTAACGAAGACAATCTCGAAGATTTGGAGAGTCCTGAGCGCAATGAGGAAGAAGTAGAGGGAAAAGTCCCTAAAACACCTCAGGAAAGGCATGGATCTCCAGTCACTCTAAACAAAAATTATGCTGCACCAAAGACAATATGTGTTAAAAACTTATCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCCAGTTCGTAACAGATTGCGAAGGAAGGTTTAGAGGCTTTGGATTTGTTAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAAATTGCATAATACAAAATTATTGAATCGCCGTATCAAAGTTGAGATAGCTTGGGAAAAGAGTGAATATCCCCCATATAAAAGTTCAATTCATACGGGTGGAAGTCTTCACTCTCACACTGTAAAGGGTTTTGACACATCTCTTGTAGAAAACAAGCCTAAAAGACCAGCTACACCAAATAAAACAAATGGTACATCAAAGACTGTATATGTCGGAAACCTGTCATACTCCGTAGAACGGGCTGATATGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTTCGTCTCCATACAGACCGCGAAGGGAAGTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCGATGAATAAGAAAGTGTTTTTTGAACGTCGCATGGTTGTCGATTTAGCTTTGGAAAGGCCTAAAGATTCCCCCAATGGAAGCTGGGCCTGGAGCAGCTCATTCCATAAGGATGAAAGAATTCAGTCTCAAACTGTACCTATGAAGTGTTTAGATACATCTCTTGAGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCAGAGAATAAGGTTCCTGAAACCCCAGCTACCCGAAGAGAGAGAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATCGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGTCTCCATGTGGATGTCGACTTTGCAACCGCAGAGGCAGCAGAAAAGGCTCTTGAGTTGGATTACACAAGATTGATGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACATTTCCCGAATAGAAGCTTGAGCATCCAATTCCAGAATTGCGAAGATTTTCAGCCTCTAACTGTATATGTGGTTGGATTTAATACATCCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGAGAGATTGCAAGGATCTCATTACCAAGAAATCGTGATTCTGGTGCTATTAAAGGGCATGCTTATTTGGATTTCAAGGATCTTGATGGCTATAAGAAGGCACTGCAACTTGATCAAACTGTAATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAGTGTATAGACGTGATAATCAGGATTTAGGTGGTGGCAGAGGTAACTATCATGTCGGTGGAAGGGATGGACTAAATCATAGACATCATAATCAGGATGTAGGTGGTGGCAGAGGTAGCTATCAAGTCGGTGGAAGGGATGAACCAAGTTATAGACATCATAATCAAATTATAGGTGGTGGCAGAGGTGGTTATCACGTCGGTGGAAGGGATGAAGCAAGTTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCATGTCGGTGGAAGGGATGAAGCAAGTTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCACGTCGGTGGAAGGGGTGGGGGAGACTATGGTGGTGGCAGAGGTTGCTATCACGTCGGTGGAAGGGATGGAGGAAATTATATACGAGATAATCAAGGTATGGGTGGTGACAGAGGTAGCTATCATGTCGGTGGAAGGGGTGGAGGAGACTATGGTGGTAGAGTAGGTTGGGGGAGAAGTCATGGTGCCGAGAGGCACTGGACAGCCAATACCAAGCACTTGTGA 2283 0.4258 MDNESEPLCEDAIPPQKIGNKREYEDEDQKEVITKKKKRILEDKDESNSDFSEHDEKLKAEIESDNSCGSLESFDDGVSDPNSNEDNLEDLESPERNEEEVEGKVPKTPQERHGSPVTLNKNYAAPKTICVKNLSYSVERADMEDIFKDCGEVVDVQFVTDCEGRFRGFGFVKFGTVEAAEKALKLHNTKLLNRRIKVEIAWEKSEYPPYKSSIHTGGSLHSHTVKGFDTSLVENKPKRPATPNKTNGTSKTVYVGNLSYSVERADMEKLFKDYGEIVDVRLHTDREGKFKGHGHVQFATEEAAQKALAMNKKVFFERRMVVDLALERPKDSPNGSWAWSSSFHKDERIQSQTVPMKCLDTSLEEGKLSCAKEVKDVEMFDAASAENKVPETPATRRERSAASKRVCVRNLSFDVERAEIENIFKDCGVVVDVRLHVDVDFATAEAAEKALELDYTRLMNHPVKVGIAPGEGEHFPNRSLSIQFQNCEDFQPLTVYVVGFNTSLAEEKIKASLHNHFKSCGEIARISLPRNRDSGAIKGHAYLDFKDLDGYKKALQLDQTVIGDHWVSVEKAKPVYRRDNQDLGGGRGNYHVGGRDGLNHRHHNQDVGGGRGSYQVGGRDEPSYRHHNQIIGGGRGGYHVGGRDEASYRRDNQGMGGGRGSYHVGGRDEASYRRDNQGMGGGRGSYHVGGRGGGDYGGGRGCYHVGGRDGGNYIRDNQGMGGDRGSYHVGGRGGGDYGGRVGWGRSHGAERHWTANTKHL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01917 760 MobiDBLite consensus disorder prediction 648 684 - -
Vivi7g01917 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 493 574 IPR000504 GO:0003723
Vivi7g01917 760 SUPERFAMILY RNA-binding domain, RBD 242 337 IPR035979 GO:0003676
Vivi7g01917 760 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 239 326 - -
Vivi7g01917 760 SMART rrm1_1 405 466 IPR000504 GO:0003723
Vivi7g01917 760 SMART rrm1_1 494 570 IPR000504 GO:0003723
Vivi7g01917 760 SMART rrm1_1 252 323 IPR000504 GO:0003723
Vivi7g01917 760 SMART rrm1_1 128 199 IPR000504 GO:0003723
Vivi7g01917 760 SUPERFAMILY RNA-binding domain, RBD 118 218 IPR035979 GO:0003676
Vivi7g01917 760 Gene3D - 361 478 IPR012677 -
Vivi7g01917 760 Gene3D - 225 334 IPR012677 -
Vivi7g01917 760 CDD RRM_SF 406 465 - -
Vivi7g01917 760 SUPERFAMILY RNA-binding domain, RBD 397 484 IPR035979 GO:0003676
Vivi7g01917 760 MobiDBLite consensus disorder prediction 16 63 - -
Vivi7g01917 760 MobiDBLite consensus disorder prediction 82 96 - -
Vivi7g01917 760 Gene3D - 93 224 IPR012677 -
Vivi7g01917 760 SUPERFAMILY RNA-binding domain, RBD 490 601 IPR035979 GO:0003676
Vivi7g01917 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 327 IPR000504 GO:0003723
Vivi7g01917 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 470 IPR000504 GO:0003723
Vivi7g01917 760 Gene3D - 485 610 IPR012677 -
Vivi7g01917 760 MobiDBLite consensus disorder prediction 66 81 - -
Vivi7g01917 760 MobiDBLite consensus disorder prediction 1 119 - -
Vivi7g01917 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 565 IPR000504 GO:0003723
Vivi7g01917 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Vivi7g01917 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 320 IPR000504 GO:0003723
Vivi7g01917 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 463 IPR000504 GO:0003723
Vivi7g01917 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 203 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01917 Vivi-Chr7 79035369 79045169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01917 128 378 Eukaryotic Initiation Factors Gene Family AT4G34110 23.529 3.64e-10 61.6