Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01916 ATGGACAATGAATCTGAACCTCTCTGTGAAGATGCAATTCCGCCACAGAAAATTGGCAACAAGAGGGAGTATGAAGACGAAGATCAGAAGGAAGTTATTACAAAGAAGAAGAAGAGAATCCTTGAGGATAAGGATGAAAGTAATTCAGATTTTTCTGAACATGATGAGAAACTTAAAGCTGAAATCGAATCTGATAACAGTTGCGGATCTTTGGAATCATTTGATGATGGTGTCTCAGATCCTAACTCTAACGAAGACAATCTCGAAGATTTGGAGAGTCCTGAGCGCAATGAGGAAGAAGTAGAGGGAAAAGTCCCTAAAACACCTCAGGAAAGGCATGGATCTCCAGTCACTCTAAACAAAAATTATGCTGCACCAAAGACAATATGTGTTAAAAACTTATCATATAGTGTGGAACGGGCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCCAGTTCGTAACAGATTGCGAAGGAAGGTTTAGAGGCTTTGGATTTGTTAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAAATTGCATAATACAAAATTATTGAATCGCCGTATCAAAGTTGAGATAGCTTGGGAAAAGAGTGAATATCCCCCATATAAAAGTTCAATTCATACGGGTGGAAGTCTTCACTCTCACACTGTAAAGGGTTTTGACACATCTCTTGTAGAAAACAAGCCTAAAAGACCAGCTACACCAAATAAAACAAATGGTACATCAAAGACTGTATATGTCGGAAACCTGTCATACTCCGTAGAACGGGCTGATATGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTTCGTCTCCATACAGACCGCGAAGGGAAGTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCGATGAATAAGAAAGTGTTTTTTGAACGTCGCATGGTTGTCGATTTAGCTTTGGAAAGGCCTAAAGATTCCCCCAATGGAAGCAGCTGGGCCTGGAGCAGCTCATTCCATAAGGATGAAAGAATTCAGTCTCAAACTGTACCTATGAAGTGTTTAGATACATCTCTTGAGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCAGAGAATAAGGTTCCTGAAACCCCAGCTACCCGAAGAGAGAGAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATCGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGTCTCCATGTGGATGTCGACTTTGCAACCGCAGAGGCAGCAGAAAAGGCTCTTGAGTTGGATTACACAAGATTGATGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACATTTCCCGAATAGAAGCTTGAGCATCCAATTCCAGAATTGCGAAGATTTTCAGCCTCTAACTGTATATGTGGTTGGATTTAATACATCCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGAGAGATTGCAAGGATCTCATTACCAAGAAATCGTGATTCTGGTGCTATTAAAGGGCATGCTTATTTGGATTTCAAGGATCTTGATGGCTATAAGAAGGCACTGCAACTTGATCAAACTGTAATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAGTGTATAGACGTGATAATCAGGATTTAGGTGGTGGCAGAGGTAACTATCATGTCGGTGGAAGGGATGGACTAAATCATAGACATCATAATCAGGATGTAGGTGGTGGCAGAGGTAGCTATCAAGTCGGTGGAAGGGATGAACCAAGTTATAGACATCATAATCAAATTATAGGTGGTGGCAGAGGTGGTTATCACGTCGGTGGAAGGGATGAAGCAAGTTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCATGTCGGTGGAAGGGATGAAGCAAGTTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCACGTCGGTGGAAGGGGTGGGGGAGACTATGGTGGTGGCAGAGGTTGCTATCACGTCGGTGGAAGGGATGGAGGAAATTATATACGAGATAATCAAGGTATGGGTGGTGACAGAGGTAGCTATCATGTCGGTGGAAGGGGTGGAGGAGACTATGGTGGTAGAGTAGGTTGGGGGAGAAGTCATGGTGCCGAGAGGCACTGGACAGCCAATACCAAGCACTTGTGA 2286 0.4261 MDNESEPLCEDAIPPQKIGNKREYEDEDQKEVITKKKKRILEDKDESNSDFSEHDEKLKAEIESDNSCGSLESFDDGVSDPNSNEDNLEDLESPERNEEEVEGKVPKTPQERHGSPVTLNKNYAAPKTICVKNLSYSVERADMEDIFKDCGEVVDVQFVTDCEGRFRGFGFVKFGTVEAAEKALKLHNTKLLNRRIKVEIAWEKSEYPPYKSSIHTGGSLHSHTVKGFDTSLVENKPKRPATPNKTNGTSKTVYVGNLSYSVERADMEKLFKDYGEIVDVRLHTDREGKFKGHGHVQFATEEAAQKALAMNKKVFFERRMVVDLALERPKDSPNGSSWAWSSSFHKDERIQSQTVPMKCLDTSLEEGKLSCAKEVKDVEMFDAASAENKVPETPATRRERSAASKRVCVRNLSFDVERAEIENIFKDCGVVVDVRLHVDVDFATAEAAEKALELDYTRLMNHPVKVGIAPGEGEHFPNRSLSIQFQNCEDFQPLTVYVVGFNTSLAEEKIKASLHNHFKSCGEIARISLPRNRDSGAIKGHAYLDFKDLDGYKKALQLDQTVIGDHWVSVEKAKPVYRRDNQDLGGGRGNYHVGGRDGLNHRHHNQDVGGGRGSYQVGGRDEPSYRHHNQIIGGGRGGYHVGGRDEASYRRDNQGMGGGRGSYHVGGRDEASYRRDNQGMGGGRGSYHVGGRGGGDYGGGRGCYHVGGRDGGNYIRDNQGMGGDRGSYHVGGRGGGDYGGRVGWGRSHGAERHWTANTKHL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01916 761 CDD RRM_SF 407 466 - -
Vivi7g01916 761 SUPERFAMILY RNA-binding domain, RBD 491 602 IPR035979 GO:0003676
Vivi7g01916 761 SUPERFAMILY RNA-binding domain, RBD 118 218 IPR035979 GO:0003676
Vivi7g01916 761 SMART rrm1_1 495 571 IPR000504 GO:0003723
Vivi7g01916 761 SMART rrm1_1 406 467 IPR000504 GO:0003723
Vivi7g01916 761 SMART rrm1_1 252 323 IPR000504 GO:0003723
Vivi7g01916 761 SMART rrm1_1 128 199 IPR000504 GO:0003723
Vivi7g01916 761 SUPERFAMILY RNA-binding domain, RBD 398 485 IPR035979 GO:0003676
Vivi7g01916 761 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 494 575 IPR000504 GO:0003723
Vivi7g01916 761 MobiDBLite consensus disorder prediction 82 96 - -
Vivi7g01916 761 MobiDBLite consensus disorder prediction 16 63 - -
Vivi7g01916 761 Gene3D - 486 611 IPR012677 -
Vivi7g01916 761 Gene3D - 93 224 IPR012677 -
Vivi7g01916 761 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 327 IPR000504 GO:0003723
Vivi7g01916 761 Gene3D - 225 334 IPR012677 -
Vivi7g01916 761 Gene3D - 362 479 IPR012677 -
Vivi7g01916 761 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Vivi7g01916 761 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 320 IPR000504 GO:0003723
Vivi7g01916 761 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 464 IPR000504 GO:0003723
Vivi7g01916 761 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 566 IPR000504 GO:0003723
Vivi7g01916 761 SUPERFAMILY RNA-binding domain, RBD 242 337 IPR035979 GO:0003676
Vivi7g01916 761 MobiDBLite consensus disorder prediction 66 81 - -
Vivi7g01916 761 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 471 IPR000504 GO:0003723
Vivi7g01916 761 MobiDBLite consensus disorder prediction 1 119 - -
Vivi7g01916 761 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 385 530 - -
Vivi7g01916 761 MobiDBLite consensus disorder prediction 649 685 - -
Vivi7g01916 761 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 203 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01916 Vivi-Chr7 79035368 79045170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01916 128 379 Eukaryotic Initiation Factors Gene Family AT4G34110 22.745 3.38e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01916 - - vvo:131620935 1410.97