Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01915 ATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTCCAGTTCGTAACAGATTGCGAAGGAAGGTTTAGAGGCTTTGGATTTGTTAAATTTGGAACAGTAGAAGCAGCAGAAAAAGCCCTCAAATTGCATAATACAAAATTATTGAATCGCCGTATCAAAGTTGAGATAGCTTGGGAAAAGAGTGAATATCCCCCATATAAAAGTTCAATTCATACGGGTGGAAGTCTTCACTCTCACACTGTAAAGGGTTTTGACACATCTCTTGTAGAAAACAAGCCTAAAAGACCAGCTACACCAAATAAAACAAATGGTACATCAAAGACTGTATATGTCGGAAACCTGTCATACTCCGTAGAACGGGCTGATATGGAAAAACTTTTCAAAGATTATGGGGAAATTGTTGATGTTCGTCTCCATACAGACCGCGAAGGGAAGTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGAAGAAGCAGCACAAAAGGCTCTTGCGATGAATAAGAAAGTGTTTTTTGAACGTCGCATGGTTGTCGATTTAGCTTTGGAAAGGCCTAAAGATTCCCCCAATGGAAGCAGCTGGGCCTGGAGCAGCTCATTCCATAAGGATGAAAGAATTCAGTCTCAAACTGTACCTATGAAGTGTTTAGATACATCTCTTGAGGAAGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCAGAGAATAAGGTTCCTGAAACCCCAGCTACCCGAAGAGAGAGAAGTGCTGCATCAAAAAGAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATCGAAAATATTTTCAAAGATTGTGGAGTAGTTGTTGATGTCCGTCTCCATGTGGATGTCGACTTTGCAACCGCAGAGGCAGCAGAAAAGGCTCTTGAGTTGGATTACACAAGATTGATGAACCATCCCGTCAAAGTTGGTATAGCTCCAGGAGAGGGTGAACATTTCCCGAATAGAAGCTTGAGCATCCAATTCCAGAATTGCGAAGATTTTCAGCCTCTAACTGTATATGTGGTTGGATTTAATACATCCCTTGCCGAAGAGAAGATAAAAGCTAGCCTGCACAATCATTTCAAATCTTGTGGAGAGATTGCAAGGATCTCATTACCAAGAAATCGTGATTCTGGTGCTATTAAAGGGCATGCTTATTTGGATTTCAAGGATCTTGATGGCTATAAGAAGGCACTGCAACTTGATCAAACTGTAATAGGAGATCATTGGGTGTCAGTTGAAAAAGCAAAGCCAGTGTATAGACGTGATAATCAGGATTTAGGTGGTGGCAGAGGTAACTATCATGTCGGTGGAAGGGATGGACTAAATCATAGACATCATAATCAGGATGTAGGTGGTGGCAGAGGTAGCTATCAAGTCGGTGGAAGGGATGAACCAAGTTATAGACATCATAATCAAATTATAGGTGGTGGCAGAGGTGGTTATCACGTCGGTGGAAGGGATGAAGCAAGTTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCATGTCGGTGGAAGGGATGAAGCAAGTTATAGACGTGATAATCAAGGTATGGGTGGTGGCAGAGGTAGCTATCACGTCGGTGGAAGGGGTGGGGGAGACTATGGTGGTGGCAGAGGTTGCTATCACGTCGGTGGAAGGGATGGAGGAAATTATATACGAGATAATCAAGGTATGGGTGGTGACAGAGGTAGCTATCATGTCGGTGGAAGGGGTGGAGGAGACTATGGTGGTAGAGTAGGTTGGGGGAGAAGTCATGGTGCCGAGAGGCACTGGACAGCCAATACCAAGCACTTGTGA 1860 0.4339 MEDIFKDCGEVVDVQFVTDCEGRFRGFGFVKFGTVEAAEKALKLHNTKLLNRRIKVEIAWEKSEYPPYKSSIHTGGSLHSHTVKGFDTSLVENKPKRPATPNKTNGTSKTVYVGNLSYSVERADMEKLFKDYGEIVDVRLHTDREGKFKGHGHVQFATEEAAQKALAMNKKVFFERRMVVDLALERPKDSPNGSSWAWSSSFHKDERIQSQTVPMKCLDTSLEEGKLSCAKEVKDVEMFDAASAENKVPETPATRRERSAASKRVCVRNLSFDVERAEIENIFKDCGVVVDVRLHVDVDFATAEAAEKALELDYTRLMNHPVKVGIAPGEGEHFPNRSLSIQFQNCEDFQPLTVYVVGFNTSLAEEKIKASLHNHFKSCGEIARISLPRNRDSGAIKGHAYLDFKDLDGYKKALQLDQTVIGDHWVSVEKAKPVYRRDNQDLGGGRGNYHVGGRDGLNHRHHNQDVGGGRGSYQVGGRDEPSYRHHNQIIGGGRGGYHVGGRDEASYRRDNQGMGGGRGSYHVGGRDEASYRRDNQGMGGGRGSYHVGGRGGGDYGGGRGCYHVGGRDGGNYIRDNQGMGGDRGSYHVGGRGGGDYGGRVGWGRSHGAERHWTANTKHL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01915 619 Gene3D - 344 480 IPR012677 -
Vivi7g01915 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 329 IPR000504 GO:0003723
Vivi7g01915 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
Vivi7g01915 619 SUPERFAMILY RNA-binding domain, RBD 256 343 IPR035979 GO:0003676
Vivi7g01915 619 MobiDBLite consensus disorder prediction 89 108 - -
Vivi7g01915 619 SUPERFAMILY RNA-binding domain, RBD 2 76 IPR035979 GO:0003676
Vivi7g01915 619 SUPERFAMILY RNA-binding domain, RBD 100 195 IPR035979 GO:0003676
Vivi7g01915 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 185 IPR000504 GO:0003723
Vivi7g01915 619 SMART rrm1_1 1 57 IPR000504 GO:0003723
Vivi7g01915 619 SMART rrm1_1 264 325 IPR000504 GO:0003723
Vivi7g01915 619 SMART rrm1_1 353 429 IPR000504 GO:0003723
Vivi7g01915 619 SMART rrm1_1 110 181 IPR000504 GO:0003723
Vivi7g01915 619 MobiDBLite consensus disorder prediction 507 543 - -
Vivi7g01915 619 CDD RRM_SF 2 57 - -
Vivi7g01915 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 433 IPR000504 GO:0003723
Vivi7g01915 619 Gene3D - 80 192 IPR012677 -
Vivi7g01915 619 Gene3D - 219 333 IPR012677 -
Vivi7g01915 619 Gene3D - 1 67 IPR012677 -
Vivi7g01915 619 SUPERFAMILY RNA-binding domain, RBD 348 460 IPR035979 GO:0003676
Vivi7g01915 619 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 238 386 - -
Vivi7g01915 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 322 IPR000504 GO:0003723
Vivi7g01915 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 55 IPR000504 GO:0003723
Vivi7g01915 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Vivi7g01915 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 424 IPR000504 GO:0003723
Vivi7g01915 619 CDD RRM_SF 265 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01915 Vivi-Chr7 79035365 79044292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01915 3 327 Eukaryotic Initiation Factors Gene Family AT4G34110 22.632 1.75e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01915 - - vvo:131620935 1124