Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01913 ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCCCGTAGAGGATACGGCGGAAGGGGGCCTAGTAGAAGCGGTTACGGTGGTGGTGGTGGTGGCGGCGGAGGAGGTGGTAGAGGTAGGCGCAGAGAGAGTAACAATGGAAGTCTTTTGGTGAGGAACATTCCTTTGGATTGTAGAGCTGAGGAACTTCGAGCTCCTTTTGAACGATTTGGACCGGTTCGTGATGTCTATATACCAAAGGATTATTACTCTGGTGAACCTCGAGGCTTTGCATTCGTTCAGTTTGTGGATTCATATGAGGCCTCTGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGAGAAATATCTGTAGTTGTGGCTGCAGAAACAAGGAAAAGGCCAGAGGAGATGAGGCATAGGACTGGTAGGCCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGCTCAATTTCCAGATCAAGATCACCTCCATATCACTCTGGGTCTAGAAGCCGCTATCGATCAAGGTCCAGGTCCTTCTCTCCTCCCCCAAGAAGGCAAGGTGATTATTCTGTTTCCCCTAGAAGGCATGTAGAACGCCCTAGATCACCTAGAAGCCCTCCAAGAAGTCCTCCTGTGGAACGAGATGGGGATCATAAACGCAGGTCGTATTCTCCCGCTTTTGACAATGGTGCTGATCAGGATCAAAGCAATGGATATACAGAGAAATCTATGTACAAATCTGAGGCTGATCGAGGTCAGTGGAAGTCATCCGGACAAAGAACATCTAGATCACCCCCTGGATCTAGGTCAAGATCTGCTGAATTGTCACCTAGACGAGGAAGATGA 864 0.4977 MRRNSPGYYSPPRRGYGGRGPSRSGYGGGGGGGGGGGRGRRRESNNGSLLVRNIPLDCRAEELRAPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTGRPRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRSRYRSRSRSFSPPPRRQGDYSVSPRRHVERPRSPRSPPRSPPVERDGDHKRRSYSPAFDNGADQDQSNGYTEKSMYKSEADRGQWKSSGQRTSRSPPGSRSRSAELSPRRGR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01913 287 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 251 - -
Vivi7g01913 287 MobiDBLite consensus disorder prediction 150 191 - -
Vivi7g01913 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Vivi7g01913 287 MobiDBLite consensus disorder prediction 125 139 - -
Vivi7g01913 287 Gene3D - 38 166 IPR012677 -
Vivi7g01913 287 MobiDBLite consensus disorder prediction 256 277 - -
Vivi7g01913 287 MobiDBLite consensus disorder prediction 234 249 - -
Vivi7g01913 287 SUPERFAMILY RNA-binding domain, RBD 43 153 IPR035979 GO:0003676
Vivi7g01913 287 SMART rrm1_1 48 121 IPR000504 GO:0003723
Vivi7g01913 287 MobiDBLite consensus disorder prediction 125 287 - -
Vivi7g01913 287 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 40 182 - -
Vivi7g01913 287 MobiDBLite consensus disorder prediction 1 48 - -
Vivi7g01913 287 MobiDBLite consensus disorder prediction 195 231 - -
Vivi7g01913 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01913 Vivi-Chr7 79026862 79030769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01913 29 109 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 8.05e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01913 K12900 - gmx:100804294 302.753