Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01905 ATGAGAAAGCCTTGTTGTGACAAAGAGAACATCAATAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTTATTGATTATATACAAGTTCATGGTGAAGGATGTTGGGGTTCCATTCCTAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGTTGTAGACTACGATGGTTAAACTACTTACGACCAGATATCAAACGTGGAGTCTTTGCACAAGATGAAGAAGACCTCGTCATTAAACTCCATGCCCTCCTTGGCAATCGGTGGGCACTCATAGCTGGAAGATTGCCTGGACGTACAGATAATGAGGTGAAGAACTATTGGAACTCTCATATTCGTAGGAAGCTAATAAAAATGGGAATTGATCCAAATAATCACAAGTTACACAAAGGTTTTCCTAGTATTAGTCCTCATGTTTCAACTGCTGGCACATCATCATGTGATGAGTCCATGAACAAAGATATCGATAATAATGCTAAACTCATCTCCTTCGACAAATTGTGCGATGCACTCGCTAATAAGAGTGTTGTTTCTGTCACAAGGAAAGAAGCTTCTTCAACAATTGATTCTTCGTCCTCTTTGAATCTTGACTTAACCATTGCTTTACCTTCAAATGATTGTGAGTCTCAGAAGACTATTGATCTTAATTGTTAA 651 0.3902 MRKPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGVFAQDEEDLVIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGFPSISPHVSTAGTSSCDESMNKDIDNNAKLISFDKLCDALANKSVVSVTRKEASSTIDSSSSLNLDLTIALPSNDCESQKTIDLNC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01905 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vivi7g01905 216 Gene3D - 13 65 - -
Vivi7g01905 216 CDD SANT 71 111 IPR001005 -
Vivi7g01905 216 CDD SANT 15 60 IPR001005 -
Vivi7g01905 216 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vivi7g01905 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
Vivi7g01905 216 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vivi7g01905 216 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vivi7g01905 216 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vivi7g01905 216 FunFam MYB transcription factor 67 128 - -
Vivi7g01905 216 FunFam MYB-related transcription factor 12 65 - -
Vivi7g01905 216 Gene3D - 68 130 - -
Vivi7g01905 216 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vivi7g01905 216 SMART sant 65 113 IPR001005 -
Vivi7g01905 216 SMART sant 12 62 IPR001005 -
Vivi7g01905 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01905 Vivi-Chr7 78949931 78951539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01905 2 205 MYB Transcription Factor Family AT4G34990 50.732 2.20e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g01905 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01905 K09422 - gmx:100306391 306.605