Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01902 ATGGCAAAAAAATCTGAAGGCTTCCAAGACCATGAAACTTCAAGTGTTGAAGAAAGCAACACTAACATCATGCAACTTTGTTTATCAAATCATACCATTACCTTGACACAAAAGGTGATTGCAGAATTCATTGGAACATACTTTGTGATATTTGCTGGGTGTGGTGTTGTAGCAGTGAATAAGATCTATGGCTCTGTGACATTTCCTGGGATTTGTATCACTTGGGGACTTATTGTAATGGTAATGTGTTACTCTGTTGGTCATATCTCTGGTGGCCACTTCAACCCTGCTGTTACCATCACTTGGGCCATATTTCGCCGTATCTCGATTAAAGAGGCTCTATTGTACATTCTTGCTCAGATGTTTGGATCAATTCTTGCGAGTGGCACATTATCTCTAATATTTGAGATCACATCCGAAACTCATTTTGGAACGGTACCGGTTGGATCAAATGCTCAATCTTTAGTTCTTGAAATCATCACCAGTTTTCTCTTATTGTTTGTCGTTTCAGCACTTGCCACGGATGAAAGAGCGGTGAATAACTTGACCGGTGTTGCAGTTGGAATGACTATAATGTTAAATGTCTTTATCACTGGGCCTGTATCAGGGGCATCTATGAACCCAGCAAGAAGTATTGGTGCTGCACTTGTTGTACATGTCTACAAAGGGTTATGGATATACATTGTTGGTCCAATTGTTGGAGCTATTGGTGGAGCAATTACCTATAACTTTCTTAGATCCATAGAGAATCCACATTCAGAAATATCCCCCAACTCTAATTTTTTTTCTAAATCCTTTTTGCTGTCAAACCTAATAAAACTAATAAGAGGGAACACACTAGCGTTTTAG 849 0.391 MAKKSEGFQDHETSSVEESNTNIMQLCLSNHTITLTQKVIAEFIGTYFVIFAGCGVVAVNKIYGSVTFPGICITWGLIVMVMCYSVGHISGGHFNPAVTITWAIFRRISIKEALLYILAQMFGSILASGTLSLIFEITSETHFGTVPVGSNAQSLVLEIITSFLLLFVVSALATDERAVNNLTGVAVGMTIMLNVFITGPVSGASMNPARSIGAALVVHVYKGLWIYIVGPIVGAIGGAITYNFLRSIENPHSEISPNSNFFSKSFLLSNLIKLIRGNTLAF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01902 282 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 Pfam Major intrinsic protein 32 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Vivi7g01902 282 SUPERFAMILY Aquaporin-like 32 254 IPR023271 -
Vivi7g01902 282 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 NCBIfam MIP family channel protein 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01902 282 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Vivi7g01902 282 PANTHER AQUAPORIN NIP2-1 12 249 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01902 Vivi-Chr7 78817705 78821803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01902 1 262 Major Intrinsic Protein MIP AT5G37810 55.762 4.63e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01902 K09874 - gmx:100791338 343.199