Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01901 ATGGCACTGACCAACAACAATATTCTATATAGTTCTATCCTTAACACCAAGTTTCAATCTTGTGTTTTTGATGAGACAACTATGGAGATTAGCAATGTTATGTCTCATGGTATGAATGAAGAAGAAGAAGACGGTTCACAAAGCAATGAATCAGCTTCAGCTTCAGCTTCTGCTTCTGCTTCTGCCACTACTCATTCTCCTACTCTATGTGGAAATACCAAAAAAGGGAATGTTTATAACAATACAAGTTATGAACTTGAAGAAGAAGAGTCTTTGATTAACTTCAAAGGTAATGATGATGAGTATTATGAGAATCTCATGCAAGGTAGTGAATCTTTGCTTAGTTTTCAGCAGAGCTGGAATATGGTTTCCAGTGAAAACAGTTTGCAGCAATGGAATCATCTTAGTCCTAAAAGCATCACAAACATGTGCATGGTTCAAGGGTTCAATAGCTTTGAAACTTCAAGTGGAAGCTATGGATCCATATTCAATAGTGCTAAAGAGAAGCAAAATGGTGAAAGCTCATGTGGGTGGCTATACTCAGATCCAAATGTCCCTTGTGATGATGATGATGATAGGTTAATAAAAGATTCGGAAACTCATGATTCGGTCGCGAAGAAGCGTTCTTCTATGGGAGAGAACATGCAACATGCTAATGCAAAGAAGCCATGCACAAGTGCAAGTAAAACGGCGAAACCGAAGTCAAATCCATCCAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGACTCAAGATCCTACAAGAACTTGTTCCCAATGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGCTATGTAAAGTTTCTTCAGTTGCAAGTCAAGGTGCTGGCAGCTGATGAATTTTGGCCAGTGAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAACAAGCAATTGATGAAATTCTTTCATCTCAAAGATGA 975 0.3846 MALTNNNILYSSILNTKFQSCVFDETTMEISNVMSHGMNEEEEDGSQSNESASASASASASATTHSPTLCGNTKKGNVYNNTSYELEEEESLINFKGNDDEYYENLMQGSESLLSFQQSWNMVSSENSLQQWNHLSPKSITNMCMVQGFNSFETSSGSYGSIFNSAKEKQNGESSCGWLYSDPNVPCDDDDDRLIKDSETHDSVAKKRSSMGENMQHANAKKPCTSASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDEILSSQR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01901 324 MobiDBLite consensus disorder prediction 189 249 - -
Vivi7g01901 324 MobiDBLite consensus disorder prediction 38 72 - -
Vivi7g01901 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Vivi7g01901 324 MobiDBLite consensus disorder prediction 189 208 - -
Vivi7g01901 324 MobiDBLite consensus disorder prediction 209 243 - -
Vivi7g01901 324 MobiDBLite consensus disorder prediction 48 72 - -
Vivi7g01901 324 Gene3D - 232 294 IPR036638 GO:0046983
Vivi7g01901 324 SMART finulus 243 292 IPR011598 GO:0046983
Vivi7g01901 324 Pfam Helix-loop-helix DNA-binding domain 247 287 IPR011598 GO:0046983
Vivi7g01901 324 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 30 294 IPR045843 GO:0003700|GO:0006355
Vivi7g01901 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 295 IPR036638 GO:0046983
Vivi7g01901 324 FunFam Transcription factor bHLH83 235 294 - -
Vivi7g01901 324 CDD bHLH_AtIND_like 238 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01901 Vivi-Chr7 78780908 78782702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01901 128 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 53.731 4.03e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g01901 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01901 - - gmx:106795957 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01901 7 78780908 78782702 Vivi7g01901 7 78780908 78782702 ECH