Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01900 ATGGCACTGACCAACAACAATATTCTATATAGTTCTATCCTTAACACCAAGTTTCAATCTTGTGTTTTTGATGAGACAACTATGGAGATTAGCAATGTTATGTCTCATGGTATGAATGAAGAAGAAGAAGACGGTTCACAAAGCAATGAATCAGCTTCAGCTTCAGCTTCTGCTTCTGCTTCTGCCACTACTCATTCTCCTACTCTATGTGGAAATACCAAAAAAGGGAATGTTTATAACAATACAAGTTATGAACTTGAAGAAGAAGAGTCTTTGATTAACTTCAAAGGTAATGATGATGAGTATTATGAGAATCTCATGCAAGGTAGTGAATCTTTGCTTAGTTTTCAGCAGAGCTGGAATATGGTTTCCAGTGAAAACAGTTTGCAGCAATGGAATCATCTTAGTCCTAAAAGCATCACAAACATGTGCATGGTTCAAGGGTTCAATAGCTTTGAAACTTCAAGTGGAAGCTATGGATCCATATTCAATAGTGCTAAAGAGAAGCAAAATGGTGAAAGCTCATGTGGGTGGCTATACTCAGATCCAAATGTCCCTTGTGATGATGATGATGATAGGTTAATAAAAGATTCGGAAACTCATGATTCGGTCGCGAAGAAGCGTTCTTCTATGGTAATGGGAGAGAACATGCAACATGCTAATGCAAAGAAGCCATGCACAAGTGCAAGTAAAACGGCGAAACCGAAGTCAAATCCATCCAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGACTCAAGATCCTACAAGAACTTGTTCCCAATGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGCTATGTAAAGTTTCTTCAGTTGCAAGTCAAGGTGCTGGCAGCTGATGAATTTTGGCCAGTGAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAACAAGCAATTGATGAAATTCTTTCATCTCAAAGATGA 981 0.3843 MALTNNNILYSSILNTKFQSCVFDETTMEISNVMSHGMNEEEEDGSQSNESASASASASASATTHSPTLCGNTKKGNVYNNTSYELEEEESLINFKGNDDEYYENLMQGSESLLSFQQSWNMVSSENSLQQWNHLSPKSITNMCMVQGFNSFETSSGSYGSIFNSAKEKQNGESSCGWLYSDPNVPCDDDDDRLIKDSETHDSVAKKRSSMVMGENMQHANAKKPCTSASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDEILSSQR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01900 326 MobiDBLite consensus disorder prediction 38 72 - -
Vivi7g01900 326 FunFam Transcription factor bHLH83 237 296 - -
Vivi7g01900 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Vivi7g01900 326 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 30 296 IPR045843 GO:0003700|GO:0006355
Vivi7g01900 326 MobiDBLite consensus disorder prediction 189 208 - -
Vivi7g01900 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 297 IPR036638 GO:0046983
Vivi7g01900 326 CDD bHLH_AtIND_like 240 302 - -
Vivi7g01900 326 SMART finulus 245 294 IPR011598 GO:0046983
Vivi7g01900 326 MobiDBLite consensus disorder prediction 48 72 - -
Vivi7g01900 326 MobiDBLite consensus disorder prediction 221 245 - -
Vivi7g01900 326 Pfam Helix-loop-helix DNA-binding domain 249 289 IPR011598 GO:0046983
Vivi7g01900 326 Gene3D - 234 296 IPR036638 GO:0046983
Vivi7g01900 326 MobiDBLite consensus disorder prediction 189 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01900 Vivi-Chr7 78780908 78782702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01900 128 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 53.234 2.11e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g01900 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01900 - - gmx:106795957 352.829