Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01890 ATGGAGAAAAGTAAGAGCATAGGAGGGAGAAAAGGTGCATGGACATATGAAGAGGACAAGCTACTGAAAGCTTGTATTGACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTGAATAGGTGCAGGAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAACCCAGCTGTCAATAGAGAAAGTTTTTCTGAGGATGAAGTTGATATGATCTTAAGGTTACACAAACTTCTAGGAAATAGATGGGCATTGATTGCTGCAAGACTTTCCGGTAGAACAGCTAATGATGTGAAGAATTACTGGCATACACATTTACGCAAGATGGTTTCAAGAAAGTTAGAAGAAAAGAAAGAAAAAGAGAAACCTAACGAAACGATGAAAAATCATGAAATTATAAAACCTCAACCTCGAACTTTCTCATCTCATTCACCATGGTTGAATGGGAAACATATCGTGCAACCAATAGTGGCGCTTTCAACGGAAGATAGTGACATAGATACTATGGTGCCAATTAATGATAATGGAGATGATGCTATGTGGTGGGAAAGTTTGTTGAACATGAGCAATGATCAAATTGGCTCATGCTCTTTACTACAAGAAGAGGGAAATTCTATTTTAGAGTTACCAAGTGTTGAGAACATTTATATTGAAGACTCCAATGTCAATGATTTTCATTGGGATTCCATCCTTTCCGAATTTGATTCTCTTTGA 723 0.3665 MEKSKSIGGRKGAWTYEEDKLLKACIDKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPAVNRESFSEDEVDMILRLHKLLGNRWALIAARLSGRTANDVKNYWHTHLRKMVSRKLEEKKEKEKPNETMKNHEIIKPQPRTFSSHSPWLNGKHIVQPIVALSTEDSDIDTMVPINDNGDDAMWWESLLNMSNDQIGSCSLLQEEGNSILELPSVENIYIEDSNVNDFHWDSILSEFDSL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01890 240 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vivi7g01890 240 FunFam Myb transcription factor 11 63 - -
Vivi7g01890 240 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vivi7g01890 240 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Vivi7g01890 240 Gene3D - 65 138 - -
Vivi7g01890 240 Gene3D - 11 63 - -
Vivi7g01890 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vivi7g01890 240 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 139 - -
Vivi7g01890 240 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Vivi7g01890 240 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Vivi7g01890 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vivi7g01890 240 CDD SANT 66 109 IPR001005 -
Vivi7g01890 240 CDD SANT 13 58 IPR001005 -
Vivi7g01890 240 SMART sant 63 111 IPR001005 -
Vivi7g01890 240 SMART sant 10 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01890 Vivi-Chr7 78646254 78647659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01890 8 189 MYB Transcription Factor Family AT1G66370 50.000 1.18e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g01890 Myb_DNA-binding 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01890 - K16166 tpra:123921946 324.324