Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01889 ATGGAGAAAAGTAAGAGTAGAGGTGTGAGAAAAGGTGCATGGACATATGAAGAAGACAAGTTACTCAAATCTTGTATTCACAAATATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTGAATAGGTGCAGGAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAACCCTGCTCTCAATAGAGAAAGTTTTTCTGAAGATGAAGTTGACATGATTTTAAGGTTACACAAACTTCTAGGAAACAGATGGTCATTAATTTCTGCGAGACTTTCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACATTTGCGCAAGAAGATGGTTTCAAGAAAATTAGAAGAAAAGAAAGAAAAAGAGACCATGAAAGCCCATGAAATTATCAAACCTCAACCTCGAACTTTTTCATCTCATTCACCATGGTTGAATGGGAAACAAATTGCAAAACCAATATTGGCGGTTTCAACTAAAGATGCTAGTATTGCAAAAGACAGTGACATAGACACTATGCTGCCAATTAATGGTGATGGAGATTGTGCTATGTGGTGGGAAAGTTTGTTGAACTTGAGCAATGAGAAAGTTGGATCATGCTCTTTAATTGATGGTCCTAGTACTGTTGGTGAATGTTATTGGGATGCTAATCTTTGTGAATTTGATTCTCTTTTAGATATTTTAAATTAA 696 0.3549 MEKSKSRGVRKGAWTYEEDKLLKSCIHKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPALNRESFSEDEVDMILRLHKLLGNRWSLISARLSGRTANDVKNYWHTHLRKKMVSRKLEEKKEKETMKAHEIIKPQPRTFSSHSPWLNGKQIAKPILAVSTKDASIAKDSDIDTMLPINGDGDCAMWWESLLNLSNEKVGSCSLIDGPSTVGECYWDANLCEFDSLLDILN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01889 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vivi7g01889 231 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vivi7g01889 231 FunFam Myb transcription factor 11 63 - -
Vivi7g01889 231 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vivi7g01889 231 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vivi7g01889 231 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Vivi7g01889 231 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vivi7g01889 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Vivi7g01889 231 Gene3D - 11 63 - -
Vivi7g01889 231 SMART sant 10 60 IPR001005 -
Vivi7g01889 231 SMART sant 63 111 IPR001005 -
Vivi7g01889 231 Gene3D - 65 135 - -
Vivi7g01889 231 CDD SANT 66 109 IPR001005 -
Vivi7g01889 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 130 - -
Vivi7g01889 231 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01889 Vivi-Chr7 78631905 78633021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01889 7 192 MYB Transcription Factor Family AT1G66370 51.220 2.85e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g01889 Myb_DNA-binding 5.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01889 - K16166 tpra:123921946 347.436