Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01881 ATGGAGAAAAGTAAGAGCATAGGTGTGAGAAAAGGTGCATGGACATATGAAGAAGATAAGCTTCTCATAGCTTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTAAAATAGCAGGTTTGAATAGGTGCCGCAAAAGTTGTAGATTGAGATGGATGAATTATTTAAACCCAACAATCAATAGAGAAAGTTTTGAGGAAGATGAAATTGATATGATTTTAAGGTTACACAAACTCTTAGGAAATAGATGGTCATTGATTGCTGGAAGGCTTCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACAAACTTGCGCAAGAAAGTGGTTTCTGAAAAAGAAGAAAATGAAGAAAAAGAAAAATTTAAAGAAACCATGAAAGCACATGAATTTATCAAACCTAGACCTCTAACCTTTTCAACAAATTCACCTTGGTTGAATGGGAAGCACAATTTTGTGAGTAATGGCAGTGCATCAAAACTCGCTATAGCATCTTCAAGTGAAGATGGTAATGTTCCAAGAGACTGTGAGAATATTGGTGATGCACAACCATGTGTTGGTAATGAGGTACTCTCTACAAGCTATGAGGAAATTGGTTCCTGCTCCTTATTACAAGAGAATAATTCTACTTTTGAGTTTTCAAATGTGGAGGATTTTTTTGCTAATAGCCCCACTATCAGTGATTCCTACTGGAATTCTAATTTCCTTTGGGATCTTTAA 732 0.3593 MEKSKSIGVRKGAWTYEEDKLLIACINKYGEGKWHLVPKIAGLNRCRKSCRLRWMNYLNPTINRESFEEDEIDMILRLHKLLGNRWSLIAGRLPGRTANDVKNYWHTNLRKKVVSEKEENEEKEKFKETMKAHEFIKPRPLTFSTNSPWLNGKHNFVSNGSASKLAIASSSEDGNVPRDCENIGDAQPCVGNEVLSTSYEEIGSCSLLQENNSTFEFSNVEDFFANSPTISDSYWNSNFLWDL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01881 243 Gene3D - 66 136 - -
Vivi7g01881 243 SMART sant 63 111 IPR001005 -
Vivi7g01881 243 SMART sant 10 60 IPR001005 -
Vivi7g01881 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Vivi7g01881 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 145 - -
Vivi7g01881 243 Gene3D - 11 63 - -
Vivi7g01881 243 FunFam Transcription factor MYB113 66 135 - -
Vivi7g01881 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vivi7g01881 243 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vivi7g01881 243 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vivi7g01881 243 FunFam Myb transcription factor 11 63 - -
Vivi7g01881 243 CDD SANT 66 109 IPR001005 -
Vivi7g01881 243 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vivi7g01881 243 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Vivi7g01881 243 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vivi7g01881 243 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01881 Vivi-Chr7 78440767 78441674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01881 8 144 MYB Transcription Factor Family AT1G66370 60.000 7.18e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g01881 Myb_DNA-binding 8.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01881 - K09422 psat:127121178 394.045