Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01854 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGAAATGAAGGAGGGGAGAATAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACTAACAGAGAAATTGATGGTCAAATACCGAATTACCCGAGTTTGCCACCACAGTTGATATGCCAGCTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGTTACAGCCATTGACTCCGCAAGAGCAGAAAGATACGTTTCTCCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTTCGAATTATTTTTGCAAGACATTGACTGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCACACAGCAACCTCCTGCACAAGAACTAATTGCTAGGGATCTCCACGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCGAGTCGGCCGCAAACTGTTATGCCGTCATCAGTTCTTTCTAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCAGCCCATGCTTCCGCAACTAATAGCTGTTTTACAGTGTTCTTTAATCCAAGAGCAAGTCCTTCCGAGTTTGTCATACAACTTTCAAAATACATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTTAGAATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGCACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCGAATTCTCATTGGAGGTCTGTCAAGGTCGGTTGGGATGAATCAACAGCTGGAGAGAGACAGCCTCGAGTCTCATTGTGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCCGGCACTTCTTCTTTTCTCGATGGCAGAGACGAAGCAACAAATGGACTAATGTGGCTGCGAGGCGGTCCCGGAGACCATGGTCTTAATTCCATGAATTTTCAAGGTGCTGGTTTGATGCCTTGGATGCAGCAAAGACTCGATCCCACTTTACTTGGAAATGATCATAATCAGCAATACCAAGCCATGTTAGCTTCTGGTGGTGGTTTGCAGAATCAAGGGAATGCTACTGATCTGTTAAGGCAACAAATGATGAGTTTTCAGCAACCTTTCAATTATCTTCAACAATCAGGAAACCTTAGTCCTTTGCAGCTTCAGCAACAGCAAACAATTCAACAATTTGTATCGACAAATAATATCATGCAACCACAAAGCCAAGTATTGGCAGAGAACCTGTCTCAGCACATCCTTCAGAAACCACACAACAATCGAGAAAACCAGACACAGCAACCACAACAGCAACAGACTTATCAAGATACACTTTTAATTCAAGGTGATCCACTCCATCAGAAGCAACACGCTAGTTTGCCTTCACCGTCATATTCGAAACCGGATTTCTTAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCGCCGGGTCAAAACATGCTTGGTTCACTTTGTTCTGAAGGGAGTGGCAATCTCTTGAATTTATCAAGTGGTCATTCTGTGCTGACTGAACAGTTACCTCAACAATCATGGGCCTCTAAGTATTCTCCTTCGCAGGTCGATGGCATTGGAAACTCAATGTCGCACATGCAGTATTCTAGAAGAGATACAGCACTCGTACCACCGCATTGCAACTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAATATCGATTCATCTGGCCTTCTGCTCCCAACCACTGTTCCTCGTTATGCTACTGCATCAGCTGATGCCGATGCATCGACAATGCCATTAGGAGAGTCTGGTTACCAGGGTTCTCCATATCAATGCATGCAGGATTCATCAGAGTTGTTGCAAAGTGTGGGACAAATCGATGCTCAAAACCAGATGCCGACATTTGTGAAGGTATACAAATCCGGTTCAGTAGGGCGCTCCCTTGATATCTCGCGGTTCAGCAGCTATCACGAACTGCGGGAGGAGTTAGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCTCCTGAAGATATGCAGAAAATGGGAGAACAAGCAATTGAATCCCTTGGTCCAAGTTCTGGACAAAGGCAGAATAACACTGGTGCAGAATCTCATGACATTGTTTCTGGACTGCCATCATTAGGCTCACTTGAATACTGA 2544 0.445 MKLSTSGMSQQGNEGGENKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFNPRASPSEFVIQLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDEATNGLMWLRGGPGDHGLNSMNFQGAGLMPWMQQRLDPTLLGNDHNQQYQAMLASGGGLQNQGNATDLLRQQMMSFQQPFNYLQQSGNLSPLQLQQQQTIQQFVSTNNIMQPQSQVLAENLSQHILQKPHNNRENQTQQPQQQQTYQDTLLIQGDPLHQKQHASLPSPSYSKPDFLDSGMKFAASVSPGQNMLGSLCSEGSGNLLNLSSGHSVLTEQLPQQSWASKYSPSQVDGIGNSMSHMQYSRRDTALVPPHCNSDAQNSVLFGVNIDSSGLLLPTTVPRYATASADADASTMPLGESGYQGSPYQCMQDSSELLQSVGQIDAQNQMPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDMQKMGEQAIESLGPSSGQRQNNTGAESHDIVSGLPSLGSLEY 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01854 847 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vivi7g01854 847 MobiDBLite consensus disorder prediction 816 834 - -
Vivi7g01854 847 SMART B3_2 128 230 IPR003340 GO:0003677
Vivi7g01854 847 Gene3D - 126 229 IPR015300 -
Vivi7g01854 847 FunFam Auxin response factor 716 810 - -
Vivi7g01854 847 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vivi7g01854 847 Pfam AUX/IAA family 716 806 IPR033389 -
Vivi7g01854 847 SUPERFAMILY CAD & PB1 domains 721 795 - -
Vivi7g01854 847 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vivi7g01854 847 ProSiteProfiles PB1 domain profile. 721 805 IPR000270 GO:0005515
Vivi7g01854 847 FunFam Auxin response factor 292 364 - -
Vivi7g01854 847 Gene3D - 716 810 - -
Vivi7g01854 847 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vivi7g01854 847 Gene3D - 292 364 - -
Vivi7g01854 847 FunFam Auxin response factor 126 230 - -
Vivi7g01854 847 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi7g01854 847 MobiDBLite consensus disorder prediction 816 847 - -
Vivi7g01854 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 810 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01854 Vivi-Chr7 77706765 77714905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01854 98 818 B3 DNA Binding Superfamily AT5G37020 68.126 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi7g01854 AUX_IAA 1.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01854 - - gmx:100780393 1444.48