Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01835 ATGGAGCAGGAACAAGAAAGCTTTGAAAGCTTCCTAACATGGACATCACAGCTTGGAATATCAGACTCATCAACCACCAATCAATCTCAACACTCTCATTCCTCCTTGGGCCATTCTCTACGCGTTTCCATCTTTCCTAACTTCGGCGGTAGAGGTTTGGGTGCTGTGAGAAATCTTAGGAGGGGAGAACTTATTCTAAAAGTTCCAAAATCTGCTTTAATGACTACAAATAGTGTTGTTATGGAAGATAAAAAGCTCTTCCTTGCTGTCAATAGACACTCTTCTCTCTCATCAGTTCAGATATTGACTGTTTGCTTGTTATACGAAGTCGGTAAAGGAAAGACTTCAAGGTGGCATCCTTACCTCGTGCATATACCACAAAGTTACGACTTGCTAGCCATGTTTGGCGAATTTGAGAAACAAGCACTGCAAGTGGATGAAGCTATGTGGGTCACAGAAAAAGCTGTACAAAAAGCCAAATTAGAATGGCAAGAAGCTCATGCTTTGATGGAAGATCTCATGTTTAAGCCTCAGCTTTTAACATTTAAGGCTTGGATTTGGGCTGCTGCAACGATATCTTCTCGGACGCTGCATATACCATGGGATGAAGCTGGTTGTTTATGTCCTATCGGCGACTTGTTTAATTATGATGCGCCTGGAGAGGACCTATCTGGTATTGAGGACATAGTGGTAGACGGAGAGCAGATTGATTTTCATTCTCAGAGACTAACAGATGGCGGGTTTGATGTAGATGCTAATGCATATTGCCTCTATGCTAGGGAAAATTACAAGAAAGGCGATCAGGTTCTATTGTGCTATGGAACATACACAAATTTGGAGCTTCTTGAACACTATGGATTTCTCTTGCAAGAAAATTCAAATGACAAAATTTTCATCCCTTTGGAACCTGCTATGTACACTTCCACTTCATGGTCTAAGGAGTCACTCTATATCCATCATAACGGAAAACCTTCATTTGCGCTACTAGCTGCGTTACGTTTGTGGGCAACCCCTCATAATAAGAGAAGATCCGTTGGACATCTCGCTTACTCTGGTTTCCAACTGTCTACCGCCAATGAAACTATTGTTATGAAATGGTTGTCGAAAACATGTGACACCGTCTTAAAGAAATTGCCAACATCTATTGAAGACGACACCATACTCGTGAATGCATTGGATAGTAATCAAAATTTTATAGCATTCATAGAGATTGCAAAGCGTATGTCTTCCATGAATGAAGTATACAACTTCTTAGAAGCTCATAATATATCAGAGCCGCATAGTTTTAGTGATATAATTTTATCGAAAAGAGCGAGAAGGTCAATAGACAGGTGGAGATTAGCTGTCTTATGGAGGCTCAGGTATAAGAAAGTCCTTGTTGAATGTATCTCTTATTGCAATGAAATATTGGATTCTTTCATGAGATAA 1428 0.4013 MEQEQESFESFLTWTSQLGISDSSTTNQSQHSHSSLGHSLRVSIFPNFGGRGLGAVRNLRRGELILKVPKSALMTTNSVVMEDKKLFLAVNRHSSLSSVQILTVCLLYEVGKGKTSRWHPYLVHIPQSYDLLAMFGEFEKQALQVDEAMWVTEKAVQKAKLEWQEAHALMEDLMFKPQLLTFKAWIWAAATISSRTLHIPWDEAGCLCPIGDLFNYDAPGEDLSGIEDIVVDGEQIDFHSQRLTDGGFDVDANAYCLYARENYKKGDQVLLCYGTYTNLELLEHYGFLLQENSNDKIFIPLEPAMYTSTSWSKESLYIHHNGKPSFALLAALRLWATPHNKRRSVGHLAYSGFQLSTANETIVMKWLSKTCDTVLKKLPTSIEDDTILVNALDSNQNFIAFIEIAKRMSSMNEVYNFLEAHNISEPHSFSDIILSKRARRSIDRWRLAVLWRLRYKKVLVECISYCNEILDSFMR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01835 475 CDD SET_LSMT 39 288 - -
Vivi7g01835 475 Gene3D - 304 474 IPR036464 -
Vivi7g01835 475 ProSiteProfiles SET domain profile. 38 274 IPR001214 GO:0005515
Vivi7g01835 475 Pfam Rubisco LSMT substrate-binding 322 459 IPR015353 -
Vivi7g01835 475 Gene3D set domain protein methyltransferase, domain 1 4 288 - -
Vivi7g01835 475 Pfam SET domain 50 274 IPR001214 GO:0005515
Vivi7g01835 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 388 - -
Vivi7g01835 475 FunFam Protein SET DOMAIN GROUP 40 8 288 - -
Vivi7g01835 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 284 395 IPR036464 -
Vivi7g01835 475 SUPERFAMILY SET domain 37 293 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01835 Vivi-Chr7 77330370 77333754 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi7g01835 SET 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01835 - - psat:127118328 869.766