Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01832 ATGTCAACCATCACGTCTGATCCTGTAATGGAGCCATGCAACAAAGACTCTAAAGAGAGTGATGGTTCCACAAAAGATGTTCGTATGAAGAACTCACTGCATGCGACGATTTCAAACCCACACGCATTTGATTGTTGCGTTTGTCTTCATCTCTTGACCATTCCCGTTTTTCAGTGTGATAATGGTCATATTGTCTGCTCAACTTGCTGTGATAAACTCGGGAACAAGTGTGACAAGTGCTCGAAACAAATTAGCTTAAAACGTTGTAGAGAATTTGAGGATCTATTGCAATCTACCAAGATGTCATGCCCGAATGAAAAATACGGTTGCAGGGAGACAATTAGTTACACTGGAAAGAGAAAGCATGGAGAAGAATGCATCTATGTGCCATGTTATTGTCCTCTTTCAGGTTGTGATTTGGTTGCCTCATTAGAAGTGTTGTACAACCATTTCAACCGTGAACACTGCGATTCTCTAATCGAATTTTCTTATGGCCACCCCTTAGTTGTCTCCTTGAAGTCTAATGATGAAACTGTGGTTCTCCAAGAGGAAAATGATGGCAGACTATTTACTCTCAATAATAGTCCTATCATGAGTATGGGAAATGCAGTCAATATCACTTGCATTGATCCTAAATATTCTACTGAGGCTGGATATAGTTATGACATATTGGCTAAGTCTAAGTTTCGCAGTCTGAAGCTACATTCTTTTCCGAAGAATGTCCATAAAGCTACTTTGGCAATTGATTCATCTGAGTTCCTCGTGATTCCAAACAGTTATTTCAGTTCTTCCGATCCTCTCAAACTAGAAATTTGCATAACCCCCAAGATGAAAATATTCGTCGAGACCTTGTCTGGAAAGGTGATCACTCTGATGGTTGAGAGTTCTGATGCGATAGCCAATGTGAAGGAGAGGATTCTTGACAAGGAAGGCTTCCCAGTGAACAAGCAACGTTTGCACTTTGACAATCAGCAACTCGATGACAGCCAGACCCTTGTCAATTACAACATCAAAGAGATGTCAATCCTTCACCTCACCCTCTGCCTCCCCTAG 1053 0.4122 MSTITSDPVMEPCNKDSKESDGSTKDVRMKNSLHATISNPHAFDCCVCLHLLTIPVFQCDNGHIVCSTCCDKLGNKCDKCSKQISLKRCREFEDLLQSTKMSCPNEKYGCRETISYTGKRKHGEECIYVPCYCPLSGCDLVASLEVLYNHFNREHCDSLIEFSYGHPLVVSLKSNDETVVLQEENDGRLFTLNNSPIMSMGNAVNITCIDPKYSTEAGYSYDILAKSKFRSLKLHSFPKNVHKATLAIDSSEFLVIPNSYFSSSDPLKLEICITPKMKIFVETLSGKVITLMVESSDAIANVKERILDKEGFPVNKQRLHFDNQQLDDSQTLVNYNIKEMSILHLTLCLP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01832 350 Pfam Seven in absentia protein family 89 260 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi7g01832 350 SUPERFAMILY Ubiquitin-like 260 347 IPR029071 -
Vivi7g01832 350 SMART ubq_7 277 348 IPR000626 GO:0005515
Vivi7g01832 350 Pfam Ubiquitin family 279 347 IPR000626 GO:0005515
Vivi7g01832 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 151 IPR013083 -
Vivi7g01832 350 ProSiteProfiles Zinc finger SIAH-type profile. 98 156 IPR013010 GO:0008270
Vivi7g01832 350 SUPERFAMILY TRAF domain-like 101 274 - -
Vivi7g01832 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 274 IPR044286 -
Vivi7g01832 350 FunFam Polyubiquitin-C 277 310 - -
Vivi7g01832 350 Gene3D - 271 350 - -
Vivi7g01832 350 PRINTS Ubiquitin signature 329 350 IPR019956 -
Vivi7g01832 350 PRINTS Ubiquitin signature 287 307 IPR019956 -
Vivi7g01832 350 PRINTS Ubiquitin signature 308 328 IPR019956 -
Vivi7g01832 350 CDD RING-HC_SIAHs 43 81 - -
Vivi7g01832 350 MobiDBLite consensus disorder prediction 1 25 - -
Vivi7g01832 350 ProSiteProfiles Ubiquitin domain profile. 277 350 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01832 Vivi-Chr7 77316431 77318631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01832 277 349 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 60.274 3.61e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01832 K04506 - mtr:11432566 416.387