Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01831 ATGGAGCCATGCAAGGGAGACTATGTTGAATCCGCAAAAGATGATAATAAGAGTAGCCCCATTTCAGTGATGATTTCGGACCCACGAGCCTTTGATTGCTGCATTTGTTTTCAACCTTTAACTATTCCCGCATTTCTGTGTGATAATGGTGGCCATATTGTTTGCTCTACCTGTTGCGATAAACTTGGGAATAAGTGTGACAAGTGTTCAAAAGACATTATCTTAAAACATTGCAGTGCCTTTGACAATCTATTGAAATCTATCAAGATATCTTGTTCAAATGAAAAATATGGATGCAAGGAGACAATAAGTTACATTGACAAGAAGATGCATGAAGAAAAATGCATCTATATTCCATGTTACTGTCCTCTTTCTGGCTGTGACTTTGTCGCTTCATATGATAAGTTATCCAACCATTTCACCAATAAACATGGTTATTCTCTAATCAAGTTTTCTTATGATCACTCTTTCATTGCCTTCTTGAAGTCCAATGATGAAGTTCAGGTCACTGTTCTTAAAGAAAAAAATAATGGAAAACTATTTTTTCTCAAGACTAATACTACAAGCATGGGAAATTCAATCAATATTAGCTACATTGGTCCTAAATCCTCCGCGAACTATTATTGTTACGATATTTTAGCAAGGTCCGAGATATGCAACTTGAAGTTAGAGTCTTCCGAAAAGAATTTCCAACAGGTTGATTCAACAACTCTTTCACCAGAGTTCCTTGTAATCCCATTTGGTTTTTTTGGTTCTTCCAAAAATCATCTCAAGCTAGAAATTTGCATAAACCACAAGATACAAATCTTCGTAGCCATCACAAGGAGATGGAGTCGTAAGATGATTTCCTTAAAGGTGGAGAGTTCAGACACGATAGCCAATCTGAAGTTGAGGATTTGTGAGATGGATGGGCTCCCAGTGGAACAACAACGCATGATGTTTGGCAATAAACAACTAGATGATAACCTCACCATTGCTGATTATAGTATCAAAGCCAAATCAACTATCCATATTGTTTCTAGTGCGACTTCTTAA 1035 0.3671 MEPCKGDYVESAKDDNKSSPISVMISDPRAFDCCICFQPLTIPAFLCDNGGHIVCSTCCDKLGNKCDKCSKDIILKHCSAFDNLLKSIKISCSNEKYGCKETISYIDKKMHEEKCIYIPCYCPLSGCDFVASYDKLSNHFTNKHGYSLIKFSYDHSFIAFLKSNDEVQVTVLKEKNNGKLFFLKTNTTSMGNSINISYIGPKSSANYYCYDILARSEICNLKLESSEKNFQQVDSTTLSPEFLVIPFGFFGSSKNHLKLEICINHKIQIFVAITRRWSRKMISLKVESSDTIANLKLRICEMDGLPVEQQRMMFGNKQLDDNLTIADYSIKAKSTIHIVSSATS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01831 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 140 IPR013083 -
Vivi7g01831 344 PRINTS Ubiquitin signature 280 300 IPR019956 -
Vivi7g01831 344 PRINTS Ubiquitin signature 322 343 IPR019956 -
Vivi7g01831 344 PRINTS Ubiquitin signature 301 321 IPR019956 -
Vivi7g01831 344 Pfam Ubiquitin family 277 340 IPR000626 GO:0005515
Vivi7g01831 344 ProSiteProfiles Ubiquitin domain profile. 267 344 IPR000626 GO:0005515
Vivi7g01831 344 ProSiteProfiles Zinc finger SIAH-type profile. 87 145 IPR013010 GO:0008270
Vivi7g01831 344 Pfam Seven in absentia protein family 80 245 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi7g01831 344 Gene3D - 261 344 - -
Vivi7g01831 344 SUPERFAMILY Ubiquitin-like 251 341 IPR029071 -
Vivi7g01831 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 9 264 IPR044286 -
Vivi7g01831 344 SMART ubq_7 271 341 IPR000626 GO:0005515
Vivi7g01831 344 SUPERFAMILY TRAF domain-like 87 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01831 Vivi-Chr7 77279023 77280380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01831 267 339 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 49.315 2.01e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01831 K04506 - mtr:11432566 379.793