Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01830 ATGGAGACATGCACAAAGGAGGATAACTCCATTTCTGTTATTATTTCCAACCCAAAAGTTCTCGACTGCTACAACTGTTTGCTACCCTTAACTATTCCAGTCTTTCAGTGTGATAATGGTCATACTGTTTGCTCTACCTGCTGTCTTCAGCTTAGGAACAAGTGTATTATCAATTGTTCCTTATGCATTAGATCGAAACGTTGTAAAGCCATAGAGAATATTCTGCAATCTATGGAAATGTCATGTCCAAATCAAATTTATGGTTGCACGGAGACAATAAGTTATTGTGGAAAGAGAAAGCATGAAGAAGAATGCACCTATGCACCATGTTACTGTCCCCTTTCAGGTTGCAACTTTGTTGCTTCAGCATATTTGTTGTCTGACCATTTCCGCCGTAAACACGGGGATTCTCAGATCAAATTTTCTTATGGTCACTCCTTCATTGTCTCCTTGAAGTCCAATGATGAAACCACTATTCTTCAAGAAAAATATTCTGGCAAATTGTTTATTCTCAATAATAGTACTACCCTTTTGGGAAATTCAGTCAGTATTAGCTGCATTGGTCCTAACTCTTTTGAGGCTGAATATGTTTACGATATATTGGCTAGGTTCAAAAACTGCAGTCTAAAATTGCATTCTTTGTTGAAGACAGTCAGGAGTGTTACTCTAGCAAGTCAATCATCAGATTTCCTTGTGATTCCATCTTGTTATTTTGGTTCTTCTAAATTTGTCAAGCTAGAAATTTGCATAACCCCCAAGATAAAAATCTTTGTGTTTGATCTGATTAGAAAGAGGACATCCACATCCCTGAAGGTGAAGAGTTCAGACACAATAGCCAATGTGAAAGAGGAGATTTTTGTTAAAATTGGGATCCCAGTCGACCAGCAAAGCCTGATCTTTGACAGTAAACAACTAGATGACCTCCGTACCATCGCGGATTACGAAATCCAAGATAATTCAACCCTCGACCTCGCCTTCCGCCTTGGTGGTCGACCATTATCATGA 1005 0.3881 METCTKEDNSISVIISNPKVLDCYNCLLPLTIPVFQCDNGHTVCSTCCLQLRNKCIINCSLCIRSKRCKAIENILQSMEMSCPNQIYGCTETISYCGKRKHEEECTYAPCYCPLSGCNFVASAYLLSDHFRRKHGDSQIKFSYGHSFIVSLKSNDETTILQEKYSGKLFILNNSTTLLGNSVSISCIGPNSFEAEYVYDILARFKNCSLKLHSLLKTVRSVTLASQSSDFLVIPSCYFGSSKFVKLEICITPKIKIFVFDLIRKRTSTSLKVKSSDTIANVKEEIFVKIGIPVDQQSLIFDSKQLDDLRTIADYEIQDNSTLDLAFRLGGRPLS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01830 334 ProSiteProfiles Ubiquitin domain profile. 254 331 IPR000626 GO:0005515
Vivi7g01830 334 Gene3D - 250 333 - -
Vivi7g01830 334 SUPERFAMILY Ubiquitin-like 229 330 IPR029071 -
Vivi7g01830 334 SMART ubq_7 256 327 IPR000626 GO:0005515
Vivi7g01830 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 130 IPR013083 -
Vivi7g01830 334 Pfam Seven in absentia protein family 67 233 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi7g01830 334 SUPERFAMILY TRAF domain-like 81 250 - -
Vivi7g01830 334 ProSiteProfiles Zinc finger SIAH-type profile. 77 135 IPR013010 GO:0008270
Vivi7g01830 334 PRINTS Ubiquitin signature 287 307 IPR019956 -
Vivi7g01830 334 PRINTS Ubiquitin signature 308 329 IPR019956 -
Vivi7g01830 334 PRINTS Ubiquitin signature 266 286 IPR019956 -
Vivi7g01830 334 Pfam Ubiquitin family 266 328 IPR000626 GO:0005515
Vivi7g01830 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 251 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01830 Vivi-Chr7 77270821 77272539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01830 19 254 C3H Transcription Factor Family AT2G41980 26.800 1.17e-19 86.3