Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01829 ATCAGTGTTAATTCCGAAGAAGACGCTACTAATGATGATAATCCCGTTTCTGTTATTATTTCCAACCCAAAAGTTCTCGATTGCTACAACTGTTTGCAACCCTTAACTATTCCAGTTTTTCAGTGTGATAATGGTCATACTGTTTGCTCTACCTGTTGTCCTCAACTTAGGAACAAGTGTATCAAGTGTTCATTACGCATTAGCTCAAAACGTTGTAAAGCCGTAGAGAATATTCTGCAATCTATGGAAATGTCATGTCCAAATGAAGAACATGGCTGTCGGAAGACAATAAGTTATTGTGGAAAGAGAAAGCATGAAGAAGAATGCACCGATGCACCATGTTACTGTCCCCTTTCAGGTTGCAACTTTGTTGCTTCATCACGATTGTTGTCCGACCATTTCCGCCGTAAACACGGGGATTCTCAGATCAAATTTTCTTATGGTCACTCCTTCATTGTCTCCTTGAAGTCCAATGATGAAACCACTATTCTTCAAGAAAAATATTCTGGCAAATTGTTTATTCTCAATAATAGTACTACCCTTTTGGGAAATTCAGTCAGTATTAGCTGCATTGGTCCTAACTCTTTTGAGGCTGACTATGTTTACGATATATTGGCTAAGTTCAAAAACTGCAGTCTAAAATTGCATTCTTTGTTGAAGAACATCCAGAGTGTTACTTTAGCAAGTCAATCATCAGATTTCCTTGTGATTCCATCTTGTTATTTTGGTTCTTCTAAATTTGTCAAGCTAGAAATTTGCATAACCCCCAAGATACAAATCTTTGTATTTGATCTGACTAGACAGAGGACATCCACATCCCTGAAGGTGGAGAGTTCAGACACAATAGCCAATGTGAAGGAGGAGATTTTTGATAAGAATGGGATCCCAGTCTACCAGCAACGCCTGATCTTTGACGGTAAACAACTAGAAGACCTCCGCACCATTGCGGATTACAAAATCCAAAATAATTCAACCCTCAACTTCGCCCTCCGCCTCTGTGGGCCACCATTATCATGA 1017 0.3933 ISVNSEEDATNDDNPVSVIISNPKVLDCYNCLQPLTIPVFQCDNGHTVCSTCCPQLRNKCIKCSLRISSKRCKAVENILQSMEMSCPNEEHGCRKTISYCGKRKHEEECTDAPCYCPLSGCNFVASSRLLSDHFRRKHGDSQIKFSYGHSFIVSLKSNDETTILQEKYSGKLFILNNSTTLLGNSVSISCIGPNSFEADYVYDILAKFKNCSLKLHSLLKNIQSVTLASQSSDFLVIPSCYFGSSKFVKLEICITPKIQIFVFDLTRQRTSTSLKVESSDTIANVKEEIFDKNGIPVYQQRLIFDGKQLEDLRTIADYKIQNNSTLNFALRLCGPPLS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01829 338 Pfam Ubiquitin family 270 332 IPR000626 GO:0005515
Vivi7g01829 338 SUPERFAMILY TRAF domain-like 85 254 - -
Vivi7g01829 338 Pfam Seven in absentia protein family 71 237 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi7g01829 338 PRINTS Ubiquitin signature 312 333 IPR019956 -
Vivi7g01829 338 PRINTS Ubiquitin signature 291 311 IPR019956 -
Vivi7g01829 338 PRINTS Ubiquitin signature 270 290 IPR019956 -
Vivi7g01829 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 134 IPR013083 -
Vivi7g01829 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 255 IPR044286 -
Vivi7g01829 338 Gene3D - 254 335 - -
Vivi7g01829 338 ProSiteProfiles Ubiquitin domain profile. 258 335 IPR000626 GO:0005515
Vivi7g01829 338 SUPERFAMILY Ubiquitin-like 233 336 IPR029071 -
Vivi7g01829 338 ProSitePatterns Ubiquitin domain signature. 286 311 IPR019954 -
Vivi7g01829 338 ProSiteProfiles Zinc finger SIAH-type profile. 81 139 IPR013010 GO:0008270
Vivi7g01829 338 FunFam 2'-5'-oligoadenylate synthase-like protein 2 257 332 - -
Vivi7g01829 338 SMART ubq_7 258 331 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01829 Vivi-Chr7 77266891 77268589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01829 258 334 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 63.636 1.96e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01829 K04506 - mtr:11432566 409.453