Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01821 ATGTCACTTACTCCCTTCTTCACAACAACACTAACCTTCTTTCTCATCTTCACACTCTCTTCAACAAAAGTAACCTCTCACTACTCCTCCTCATCTTCCCAATCACCACCTTCTCAACAAACCTCACCATCTTTCACCGAATGGCGATCCGCACGCGCTACCTACTACGCCGCCGTCGATCCACGTGACACAGTCGGCGGCGCGTGCGGCTACGGCGACCTAACAAAAGCCGGTTACGGTATGGCTACGGTAGGTCTTAGCGAGGCTTTGTTCGAACGAGGTCAGATCTGTGGCGCGTGCTTTGAATTACGGTGTGTGGAGGATTTGCGGTGGTGTATTCCTGGAACTTCGATTATTGTTACTGCAACTAACTTCTGTTCGCCGAATTATGGATTCACGTCGGAGGGAGGTGGACATTGTAATCCGCCTAATAAGCATTTTGTACTTCCTATTGATGCGTTTGAGAAGATCGCTATATGGAAAGCTGGTAACATGCCTCTTCAGTATCGTAGGATAAAGTGCAGAAGAGAAGGTGGAATCCGATTTACAGTCACTGGTTCTGGTATTTTCATTTCAGTGCTGATCAGTAATGTTGCTGGCCATGGAGACATAGTTGCGGTGAAGGTTAAAGGGTCGAGAACGGGTTGGCTTTCAATGGGTCGGAACTGGGGCCAAAACTGGCATATAAATGCGTTACTACAAAATCAACCCCTTTCATTTGAGGTTACCAGTAGCGATGGGAAAACAGTTACATCATACAATGTTGCTCGTAAGGATTGGAGTTTTGGACAAACCTTTGAAGGAAAACAATTTGATTATTAA 822 0.4611 MSLTPFFTTTLTFFLIFTLSSTKVTSHYSSSSSQSPPSQQTSPSFTEWRSARATYYAAVDPRDTVGGACGYGDLTKAGYGMATVGLSEALFERGQICGACFELRCVEDLRWCIPGTSIIVTATNFCSPNYGFTSEGGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPLQYRRIKCRREGGIRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLSMGRNWGQNWHINALLQNQPLSFEVTSSDGKTVTSYNVARKDWSFGQTFEGKQFDY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01821 273 Gene3D - 179 271 IPR036749 -
Vivi7g01821 273 SUPERFAMILY PHL pollen allergen 176 268 IPR036749 -
Vivi7g01821 273 Gene3D - 31 175 IPR036908 -
Vivi7g01821 273 CDD DPBB_EXPA_N 47 174 - -
Vivi7g01821 273 PRINTS Expansin signature 137 154 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 225 246 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 178 190 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 154 167 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 254 270 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 118 128 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 105 116 IPR002963 GO:0009664
Vivi7g01821 273 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Vivi7g01821 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 179 IPR007112 -
Vivi7g01821 273 Pfam Expansin C-terminal domain 180 256 IPR007117 -
Vivi7g01821 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 268 IPR007117 -
Vivi7g01821 273 PANTHER EXPANSIN-A15 13 271 IPR002963 GO:0009664
Vivi7g01821 273 SUPERFAMILY Barwin-like endoglucanases 47 197 IPR036908 -
Vivi7g01821 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Vivi7g01821 273 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Vivi7g01821 273 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Vivi7g01821 273 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vivi7g01821 273 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vivi7g01821 273 PRINTS Expansin/Lol pI family signature 162 178 IPR007118 GO:0005576
Vivi7g01821 273 SMART dpbb_1 83 169 IPR007112 -
Vivi7g01821 273 Pfam Lytic transglycolase 84 169 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01821 Vivi-Chr7 77130207 77133238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01821 47 272 Expansin Gene Family AT3G03220 83.628 7.03e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01821 - - gmx:100809568 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01821 7 77130207 77133238 Vivi7g01821 7 77130207 77133238 ECH