Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01819 ATGGCTATTCTGGGTCAAAAAGACGGAATGGATTCTGTTATACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCTTTGAAGGTAAGGAAACCATATACTATCACAAAGCAGAGAGAGAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGTTGTATGGCCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACCAATGGGAACGACACAACATTGGTGGAGTCAATTGAAATTCCACCTCCACGACCGAAGCGGAAGCCGATTCATCCTTACCCTCGTAAACTAGTAGAGATGCCGAAGAATGAAATCTCCAACTTGGAACAGCCACTGATGTCTAATTCTCTCGCGTCGTTAGATTTTGGTCAAGAAAATAGCTCGCCCAAGTCGGTACTATCTGCAGTTGCTTCTGAGACCCTTGGTTTCTCGGATTCAGATACTCCAACCGGAAGTTTGTCGCCTGCCTCATCCATCAGTGCCGTCGAAACCAGAAGATTTCCACTTCTTGAGACCAAATCTTCATCATCTGAAGAAGATATGTCTCTGCAAATAGATGAACTGAATGCTGATTCAGCACATGATGAGCAACCTATAATGAAACCTGAGCCTTTCTTGAAAGAATGTGTCGTTACTAACGACGAAGCAACAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAGCAACTCTAGTAGTAAAAGATACATGTCAACCTTCATCTGCATCAACGGACACATCCAAGCCGATACTTGCTTTGCATCAGCAACTTCAGGGTGAAAGTTCTGATATTGGTGTTGCAACTGTTGTTCCTTGGTGGACTCTTTCCCACAGTTCAGCCGTTAACAAAGAACCAGAAGAGAAACATCAACATTCAAATCACGCAGAATGTGAAGATAAAGAAATTCAAAAGGAAGGATCTTCTTGCGCTGGTTCTAATAACACTAGTTCAATCAATGATGGAGAAAGCAATGAAAGATCTGAAGATCAAGCCAAAAGTGATCATGTGCAGTACCTTGTTGGCCAAAGTGAAACAGTGAGACTTAGAACATTTGGGAGAGGGTTTGTGCCATATAAAAGATGCATGGCAGAAAGAGAAAGCCATAGTTCAACAGTAAGAGATGAGAGGAGGGAACATCAACGTATAAGGCTTTCTTTATAG 1248 0.4175 MAILGQKDGMDSVIHVHKLLDQFSCGNDHALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDTTLVESIEIPPPRPKRKPIHPYPRKLVEMPKNEISNLEQPLMSNSLASLDFGQENSSPKSVLSAVASETLGFSDSDTPTGSLSPASSISAVETRRFPLLETKSSSSEEDMSLQIDELNADSAHDEQPIMKPEPFLKECVVTNDEATEESPCRTLKLFGATLVVKDTCQPSSASTDTSKPILALHQQLQGESSDIGVATVVPWWTLSHSSAVNKEPEEKHQHSNHAECEDKEIQKEGSSCAGSNNTSSINDGESNERSEDQAKSDHVQYLVGQSETVRLRTFGRGFVPYKRCMAERESHSSTVRDERREHQRIRLSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01819 415 Pfam Myb-like DNA-binding domain 43 86 IPR001005 -
Vivi7g01819 415 CDD SANT 45 88 IPR001005 -
Vivi7g01819 415 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Vivi7g01819 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Vivi7g01819 415 ProSiteProfiles SANT domain profile. 41 92 IPR017884 -
Vivi7g01819 415 MobiDBLite consensus disorder prediction 101 120 - -
Vivi7g01819 415 SMART sant 42 90 IPR001005 -
Vivi7g01819 415 MobiDBLite consensus disorder prediction 393 415 - -
Vivi7g01819 415 MobiDBLite consensus disorder prediction 310 364 - -
Vivi7g01819 415 PANTHER SWI/SNF COMPLEX-RELATED 27 343 - -
Vivi7g01819 415 MobiDBLite consensus disorder prediction 335 350 - -
Vivi7g01819 415 MobiDBLite consensus disorder prediction 310 334 - -
Vivi7g01819 415 Gene3D - 45 92 - -
Vivi7g01819 415 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Vivi7g01819 415 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Vivi7g01819 415 FunFam protein REVEILLE 6 isoform X1 45 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01819 Vivi-Chr7 77114820 77117807 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi7g01819 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01819 - - gmx:778060 471.855