Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01790 ATGGTTTTATCATGGACAAAAGGTAGTAGAGTTTTCCGTCGTGCAAGAAAAGGCAAAGAGTTATTATCAAACTCATGCAACGATCTACAAGTGGAGATAGCGATTCCAACTCATTTCCGTTGCCCGGTGACACTAGATTTAATGAAAGATCCCGTTACACTTTCGACCGGCATAACCTACGACAGGGACAGCATCGAGAAATGGATCGAATCTGGTAACAAAACATGTCCGGTTACGAAAACCGAGTTAACGTCCTTCGACATCATTCCAAATCACTCCCTTCGTAGAATGATTCAAGATTGGTGCGTTCAACACCGTTCCTATGGAGTTGAAAGAATCCCAACACCTCGTATCCCCGTTTCTGCGTACCAGGTTAAAGACACGTGTACGAGGATCCTGTCGGCGGCGCAAATGGGAGACGAGAACAAGGTTATTGAACTGGTGAAGAAGATAAAGGGTTGGGGAAAAGAGAGTGAGAGGAACAAGAAATGTATAGTTTCAAATGGTGCTGCTCTTGTTCTTTCGAATGTTTTTGATTCTTTCTCACGTGGTTCTATTGAGAAGAATTTTGTTGTTTTGGAAGAGATTTTGGAGGTGCTGACGTGGATGCGTCCTATTCCTGAAGAGGGTAGATTTCTCTATTTGGGATCTTCAAATTCTTTGAGTTGTTTGGTTTGGTTCTTAAATGATAAACAACAAACTTCAACTAGACAAAGTGCTTCTTTGTTGCTTAAGGAAATTCATGTTGACTCATTGGTGAAAGTTGAAGGAATAGTTGAATCTTTGGTGAACATGGTTAAGGTTAATGTCGGTGATGTTTCTACGAAAGCATGTTTGTCAACAATTTTCCACTTGGTTTACTCATCAAAGAGTAAAAAAGTGATTATAGAGAGGTTTGTTGAACTGGGTTTAGTTTCAATTTTATTGGAGATTCTAGTTGATGCTGAAAAAGGGATATGTGAGAAAGCTTTAGGCGTGTTGAACTGTCTTTGCGATAGTGAAAATGGGGTGCAAATAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTTATCAAGAAGCTTTTGAGGGTTTCTGAATTGAGTTCAAGTTTTGTTGTTTCTATTGTTTACAAGATTTGTGATGAGGCTGAAGAAGGTGTTTTAATTGAGGCAATTCAAGTTGGGATGTTTCAGAAACTACTTGTTTTGTTGCAAGTGGGTTGTGCTGATAGTACAAAGGAGAAAGCTACTGAGTTGTTGAAGTTATTGAATGGTTATAAGAGCAAAGCAGAGTGTGTTGATTCATCATTGGATCTCATGCATCTAAAGAAGCCATTCTAA 1320 0.3924 MVLSWTKGSRVFRRARKGKELLSNSCNDLQVEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWIESGNKTCPVTKTELTSFDIIPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVSAYQVKDTCTRILSAAQMGDENKVIELVKKIKGWGKESERNKKCIVSNGAALVLSNVFDSFSRGSIEKNFVVLEEILEVLTWMRPIPEEGRFLYLGSSNSLSCLVWFLNDKQQTSTRQSASLLLKEIHVDSLVKVEGIVESLVNMVKVNVGDVSTKACLSTIFHLVYSSKSKKVIIERFVELGLVSILLEILVDAEKGICEKALGVLNCLCDSENGVQIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICDEAEEGVLIEAIQVGMFQKLLVLLQVGCADSTKEKATELLKLLNGYKSKAECVDSSLDLMHLKKPF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01790 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
Vivi7g01790 439 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Vivi7g01790 439 FunFam RING-type E3 ubiquitin transferase 29 111 - -
Vivi7g01790 439 CDD RING-Ubox_PUB 36 87 IPR045210 -
Vivi7g01790 439 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Vivi7g01790 439 Gene3D - 127 430 IPR011989 -
Vivi7g01790 439 SUPERFAMILY ARM repeat 133 416 IPR016024 -
Vivi7g01790 439 PANTHER WDSAM1 PROTEIN 32 426 IPR045185 GO:0061630
Vivi7g01790 439 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Vivi7g01790 439 SUPERFAMILY RING/U-box 32 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01790 Vivi-Chr7 76807350 76809013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01790 10 439 U-box Gene Family AT5G37490 44.165 5.11e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01790 - - gmx:100795913 637.491